View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4647-Insertion-6 (Length: 990)

Name: NF4647-Insertion-6
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4647-Insertion-6
NF4647-Insertion-6
[»] chr3 (8 HSPs)
chr3 (78-378)||(513835-514135)
chr3 (501-687)||(513294-513504)
chr3 (849-990)||(512912-513055)
chr3 (898-990)||(512354-512446)
chr3 (10-80)||(519809-519879)
chr3 (379-447)||(513742-513806)
chr3 (149-198)||(51763736-51763785)
chr3 (846-875)||(47769170-47769199)
[»] chr4 (19 HSPs)
chr4 (98-285)||(371242-371422)
chr4 (538-703)||(371546-371712)
chr4 (894-990)||(371885-371981)
chr4 (10-80)||(366677-366747)
chr4 (10-71)||(529530-529591)
chr4 (436-478)||(371469-371511)
chr4 (508-572)||(6007661-6007725)
chr4 (912-988)||(14474373-14474449)
chr4 (153-280)||(21833562-21833689)
chr4 (517-559)||(2391017-2391059)
chr4 (388-420)||(371435-371467)
chr4 (153-201)||(1601177-1601225)
chr4 (912-948)||(37770254-37770290)
chr4 (249-288)||(532590-532629)
chr4 (517-559)||(2381389-2381431)
chr4 (517-571)||(2525762-2525816)
chr4 (524-577)||(548265-548318)
chr4 (517-570)||(2486312-2486365)
chr4 (508-577)||(8186112-8186181)
[»] scaffold0400 (1 HSPs)
scaffold0400 (919-978)||(9109-9168)
[»] scaffold0365 (1 HSPs)
scaffold0365 (919-978)||(9752-9811)
[»] chr8 (6 HSPs)
chr8 (151-286)||(18314886-18315021)
chr8 (918-969)||(28219197-28219248)
chr8 (935-988)||(7966192-7966245)
chr8 (517-577)||(32152211-32152271)
chr8 (918-988)||(10840919-10840988)
chr8 (517-579)||(18318361-18318423)
[»] chr5 (4 HSPs)
chr5 (912-966)||(42289623-42289677)
chr5 (535-579)||(32268817-32268861)
chr5 (517-577)||(41900250-41900310)
chr5 (151-201)||(41900804-41900854)
[»] chr7 (1 HSPs)
chr7 (528-579)||(15091347-15091398)
[»] chr1 (2 HSPs)
chr1 (242-289)||(9581450-9581497)
chr1 (242-289)||(9587021-9587068)
[»] chr6 (2 HSPs)
chr6 (918-988)||(4893110-4893180)
chr6 (163-216)||(6588601-6588654)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-104; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 78 - 378
Target Start/End: Complemental strand, 514135 - 513835
Alignment:
Q  78 catgtcaaactcttgaaactcaacaaggagtcaatgaaacatgaagtaaaagtcagataattgggaaagtcggtggaaaaggatgaagaggtcaatgttg 177  Q
    |||||||||||| | |||| |||||| ||||||||||||||||||||||||||| |||  ||||||||||||  ||||||||||  ||||||||||||||    
T  514135 catgtcaaactcatcaaacacaacaacgagtcaatgaaacatgaagtaaaagtctgatcgttgggaaagtcgtcggaaaaggatatagaggtcaatgttg 514036  T
Q  178 gtctctgacggagagcagaagcaataccttgattggttatgtgatagctattaaagatgataagctcttgaagaagcttacagtttttgaacaagtggaa 277  Q
    |||||| |||||||||||||||||||||||| ||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  514035 gtctctcacggagagcagaagcaataccttgtttggttatgcgatcgcaattaaagatgataacctcttgaagaagcttacagtttttgaacaagtggaa 513936  T
Q  278 aagcaattggttattcaagtgacgatgagcagagagatcaatcttgcgtagttggaaaagtgagtctgaacgagcctttatcccatcaccaccagttaag 377  Q
    |||| |||||| || |||||||| ||||  |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |||||    
T  513935 aagcgattggtcatccaagtgactatgaagagagagatcaatcttgcggagttggaaaagtgagtctgaaagagcctttatcccatcaccatcaattaag 513836  T
Q  378 t 378  Q
    |    
T  513835 t 513835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 501 - 687
Target Start/End: Complemental strand, 513504 - 513294
Alignment:
Q  501 tacggacagtgagaaggaatcggagattgttggtgatggagagtaactgttttgagacgtcggagagagatttcaagcag---------------ttgcc 585  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||               |||||    
T  513504 tacggacagtgagagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaagcagttgttgttcttgtagttgcc 513405  T
Q  586 ttccactg---------taaaatcattttcatcatcaaaatcgacgaatttcatgtagcgccggttgtagtctccgtcctctttcagggatctcagaaca 676  Q
    ||| ||||         || |||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  513404 ttcgactgatacatcagtataatcattttcatcatcaaaatcgaagaatttgatgtagcggcggttgtagtctccgtcctctttgagggatctgagaaca 513305  T
Q  677 aattcccaaca 687  Q
    |||||||||||    
T  513304 aattcccaaca 513294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 849 - 990
Target Start/End: Complemental strand, 513055 - 512912
Alignment:
Q  849 ttactttttccaccctatcatcttctttcgcgccctannnnnnna--acaaaaatgttcatagagtttttagattttataatctcaattgagtttttcct 946  Q
    |||||||||||||||||||||||||||||||| ||||          |||||||| |||||||||||||||||||||||||||  |||||||||||||||    
T  513055 ttactttttccaccctatcatcttctttcgcgtcctattttttttttacaaaaatattcatagagtttttagattttataatccgaattgagtttttcct 512956  T
Q  947 ttgttatgggatgaacaaaatgaagttttcactaattcggatct 990  Q
    ||||||||||||||| |||||||| |||||||||||||||||||    
T  512955 ttgttatgggatgaagaaaatgaatttttcactaattcggatct 512912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 898 - 990
Target Start/End: Complemental strand, 512446 - 512354
Alignment:
Q  898 aaatgttcatagagtttttagattttataatctcaattgagtttttcctttgttatgggatgaacaaaatgaagttttcactaattcggatct 990  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  512446 aaatgttcatagagtttttagattttataatctgaattgagtttttcctttgttatgggatgaagaaaatgaatttttcactaattcggatct 512354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 519879 - 519809
Alignment:
Q  10 aagggggtcaggttgagcatttttgtagtctaaagaggtgaagcacacaccgtcctgaaaaatacagccat 80  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  519879 aagggggtcaggttgagcatttttgtagtctaaagaggtgaaccacacaccgtcgtgaaaaatacagccat 519809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 379 - 447
Target Start/End: Complemental strand, 513806 - 513742
Alignment:
Q  379 gagttcttcaagcaaggggaaacagttggcaatgagaaataaataagtgagaggtcttgagagtaataa 447  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||| |||||||    
T  513806 gagttcttcaagcaaggggaaacagttggcaatgagaa----ataagtgagaggtcttgagggtaataa 513742  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 51763785 - 51763736
Alignment:
Q  149 ggtggaaaaggatgaagaggtcaatgttggtctctgacggagagcagaag 198  Q
    ||||||||||||| |||| |||||||||||||| | ||||||||||||||    
T  51763785 ggtggaaaaggataaagacgtcaatgttggtctttcacggagagcagaag 51763736  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 846 - 875
Target Start/End: Original strand, 47769170 - 47769199
Alignment:
Q  846 ttattactttttccaccctatcatcttctt 875  Q
    ||||||||||||||||||||||||||||||    
T  47769170 ttattactttttccaccctatcatcttctt 47769199  T

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Target: chr4 (Bit Score: 136; Significance: 2e-70; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 98 - 285
Target Start/End: Original strand, 371242 - 371422
Alignment:
Q  98 caacaaggagtcaatgaaacatgaagtaaaagtca-gataattgggaaagtcggtggaaaaggatgaagaggtcaatgttggtctctgacggagagcaga 196  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  371242 caacaaggagtcaatgaaacatgaagtaaaagtcaagatcattgggaaagtcggtggaaaaggataaagaggtcaatgttggtctctgaaggagagcaga 371341  T
Q  197 agcaataccttgattggttatgtgatagctattaaagatgataagctcttgaagaagcttacagtttttgaacaagtggaaaagcaatt 285  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||||||||||||||||||||    
T  371342 agcaataccttgattggttatgtgatagctattaaagatgataacctc--------gcttacagtttttgaacaagtggaaaagcaatt 371422  T

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Target: chr4; HSP #2
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 538 - 703
Target Start/End: Original strand, 371546 - 371712
Alignment:
Q  538 ggagagtaactgttttgagacgtcggagagagatttcaagcagttgccttccactgtaaaatc----attttcatcatcaaaatcgacgaatttcatgta 633  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    |||||||||||||||||||||||||||||||||    
T  371546 ggagattaactgttttgagacggcggagagagatttcaagcagttgccttccactgtataatcaatcattttcatcatcaaaatcgacgaatttcatgta 371645  T
Q  634 gcgccggttgtagtctccgtcctctttcagggatctcagaacaaattcccaacatcagccattgttttgt 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  371646 gcgccggttgtagtctccgtcctctttcagggatctcagaacaaattcccaa---cagccattgttttgt 371712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 894 - 990
Target Start/End: Original strand, 371885 - 371981
Alignment:
Q  894 acaaaaatgttcatagagtttttagattttataatctcaattgagtttttcctttgttatgggatgaacaaaatgaagttttcactaattcggatct 990  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  371885 acaaaaatgctcttagagtttttagattttataatctcaattcagtttttcctttgttatgggatgaacaaaatgaagttttcactaatttggatct 371981  T

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Target: chr4; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 366677 - 366747
Alignment:
Q  10 aagggggtcaggttgagcatttttgtagtctaaagaggtgaagcacacaccgtcctgaaaaatacagccat 80  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  366677 aagggggtcaggttgagcatttttgtagtctaaagaggtgaaccacacaccgtcctgaaaaatacagccat 366747  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 529591 - 529530
Alignment:
Q  10 aagggggtcaggttgagcatttttgtagtctaaagaggtgaagcacacaccgtcctgaaaaa 71  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  529591 aagggggtcaggttgagcatttttgtagtctaaagaggtgaaccacacaccgtcctgaaaaa 529530  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 436 - 478
Target Start/End: Original strand, 371469 - 371511
Alignment:
Q  436 tgagagtaataaatgaagttgatcggagatattgagagttgtt 478  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  371469 tgagagtaataaatgaagttgatcggagatattcagagttgtt 371511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 508 - 572
Target Start/End: Original strand, 6007661 - 6007725
Alignment:
Q  508 agtgagaaggaatcggagattgttggtgatggagagtaactgttttgagacgtcggagagagatt 572  Q
    |||||||  |||||||||| |||||||||||||||| |||||||| ||||||  |||||||||||    
T  6007661 agtgagagagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagagatt 6007725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 912 - 988
Target Start/End: Complemental strand, 14474449 - 14474373
Alignment:
Q  912 tttttagattttataatctcaattgagtttttcctttgttatgggatgaacaaaatgaagttttcactaattcggat 988  Q
    |||| |||||||| ||||  ||||||||||||||||| |||||||||||| |||||||  | ||||| |||||||||    
T  14474449 ttttcagattttagaatccaaattgagtttttccttttttatgggatgaaaaaaatgagttcttcaccaattcggat 14474373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 280
Target Start/End: Complemental strand, 21833689 - 21833562
Alignment:
Q  153 gaaaaggatgaagaggtcaatgttggtctctgacggagagcagaagcaataccttgattggttatgtgatagctattaaagatgataagctcttgaagaa 252  Q
    ||||||||| ||||  ||||||||||||||| ||||||||| |||||||| ||||   || |||| ||||  | || ||| ||||| | ||||| |||||    
T  21833689 gaaaaggataaagaactcaatgttggtctctcacggagagctgaagcaatgccttctctgcttatttgatcacaatcaaacatgatgacctcttcaagaa 21833590  T
Q  253 gcttacagtttttgaacaagtggaaaag 280  Q
    ||||||| || || | ||||||||||||    
T  21833589 gcttacaattctttagcaagtggaaaag 21833562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 517 - 559
Target Start/End: Complemental strand, 2391059 - 2391017
Alignment:
Q  517 gaatcggagattgttggtgatggagagtaactgttttgagacg 559  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  2391059 gaatcggagattgttggtgatggagagtaattgtttcgagacg 2391017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 371435 - 371467
Alignment:
Q  388 aagcaaggggaaacagttggcaatgagaaataa 420  Q
    |||||||||||||||||||||||||||||||||    
T  371435 aagcaaggggaaacagttggcaatgagaaataa 371467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 1601177 - 1601225
Alignment:
Q  153 gaaaaggatgaagaggtcaatgttggtctctgacggagagcagaagcaa 201  Q
    ||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  1601177 gaaaaggataaagacctcaatgttggtctctcacggagagcagaagcaa 1601225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 912 - 948
Target Start/End: Complemental strand, 37770290 - 37770254
Alignment:
Q  912 tttttagattttataatctcaattgagtttttccttt 948  Q
    ||||||||||||||||||| |||||||||||||||||    
T  37770290 tttttagattttataatctgaattgagtttttccttt 37770254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 532590 - 532629
Alignment:
Q  249 agaagcttacagtttttgaacaagtggaaaagcaattggt 288  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  532590 agaagcttacaatttttgaacaagtggaaaagcgattggt 532629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 517 - 559
Target Start/End: Complemental strand, 2381431 - 2381389
Alignment:
Q  517 gaatcggagattgttggtgatggagagtaactgttttgagacg 559  Q
    |||||||||| |||||||||| |||||||||||||| ||||||    
T  2381431 gaatcggagactgttggtgatcgagagtaactgtttggagacg 2381389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 517 - 571
Target Start/End: Original strand, 2525762 - 2525816
Alignment:
Q  517 gaatcggagattgttggtgatggagagtaactgttttgagacgtcggagagagat 571  Q
    |||||| ||| ||||||||||||| || |||||||||||||||  ||||||||||    
T  2525762 gaatcgaagactgttggtgatggacagaaactgttttgagacgagggagagagat 2525816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 524 - 577
Target Start/End: Original strand, 548265 - 548318
Alignment:
Q  524 agattgttggtgatggagagtaactgttttgagacgtcggagagagatttcaag 577  Q
    ||||| |||||||||||||| ||||||||||||||  | |||||||| ||||||    
T  548265 agattattggtgatggagagaaactgttttgagacaacagagagagacttcaag 548318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 517 - 570
Target Start/End: Original strand, 2486312 - 2486365
Alignment:
Q  517 gaatcggagattgttggtgatggagagtaactgttttgagacgtcggagagaga 570  Q
    ||||||||||  |||||||||||| || |||||||||||||||  |||||||||    
T  2486312 gaatcggagacggttggtgatggacagaaactgttttgagacgagggagagaga 2486365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 508 - 577
Target Start/End: Complemental strand, 8186181 - 8186112
Alignment:
Q  508 agtgagaaggaatcggagattgttggtgatggagagtaactgttttgagacgtcggagagagatttcaag 577  Q
    |||||||  ||| |||||| || ||||||||||||| |||| |||||||| | | |||||||||||||||    
T  8186181 agtgagagagaaccggagactgctggtgatggagagaaacttttttgagatgaccgagagagatttcaag 8186112  T

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Target: scaffold0400 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 919 - 978
Target Start/End: Original strand, 9109 - 9168
Alignment:
Q  919 attttataatctcaattgagtttttcctttgttatgggatgaacaaaatgaagttttcac 978  Q
    |||||||||||| |||||||||||| |||||||||||||| || |||||||| |||||||    
T  9109 attttataatctaaattgagttttttctttgttatgggattaaaaaaatgaatttttcac 9168  T

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Target: scaffold0365 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 919 - 978
Target Start/End: Original strand, 9752 - 9811
Alignment:
Q  919 attttataatctcaattgagtttttcctttgttatgggatgaacaaaatgaagttttcac 978  Q
    |||||||||||| |||||||||||| |||||||||||||| || |||||||| |||||||    
T  9752 attttataatctaaattgagttttttctttgttatgggattaaaaaaatgaatttttcac 9811  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 286
Target Start/End: Complemental strand, 18315021 - 18314886
Alignment:
Q  151 tggaaaaggatgaagaggtcaatgttggtctctgacggagagcagaagcaataccttgattggttatgtgatagctattaaagatgataagctcttgaag 250  Q
    |||||| |||| ||||  |||| |||||||||| |||||||||| ||||||||||    |||||||| ||||  |  | ||| |||||   |||||  ||    
T  18315021 tggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgtctcttcgag 18314922  T
Q  251 aagcttacagtttttgaacaagtggaaaagcaattg 286  Q
    |||||||||||| |||||||||||||||||| ||||    
T  18314921 aagcttacagttcttgaacaagtggaaaagcgattg 18314886  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 918 - 969
Target Start/End: Complemental strand, 28219248 - 28219197
Alignment:
Q  918 gattttataatctcaattgagtttttcctttgttatgggatgaacaaaatga 969  Q
    ||||||||||||  ||||||||||||||||||||||||| |||| |||||||    
T  28219248 gattttataatccgaattgagtttttcctttgttatggggtgaaaaaaatga 28219197  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 935 - 988
Target Start/End: Complemental strand, 7966245 - 7966192
Alignment:
Q  935 tgagtttttcctttgttatgggatgaacaaaatgaagttttcactaattcggat 988  Q
    ||||||||||||||||||||||||||| |||||||  ||||||| || ||||||    
T  7966245 tgagtttttcctttgttatgggatgaaaaaaatgagtttttcaccaaatcggat 7966192  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 517 - 577
Target Start/End: Original strand, 32152211 - 32152271
Alignment:
Q  517 gaatcggagattgttggtgatggagagtaactgttttgagacgtcggagagagatttcaag 577  Q
    |||||||||| |||||||||||||||| |||||||| ||||||  |||||| || ||||||    
T  32152211 gaatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaag 32152271  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 918 - 988
Target Start/End: Complemental strand, 10840988 - 10840919
Alignment:
Q  918 gattttataatctcaattgagtttttcctttgttatgggatgaacaaaatgaagttttcactaattcggat 988  Q
    ||||||||||||  || || ||||||||||||||||||| |||| ||||||| |||| ||| |||||||||    
T  10840988 gattttataatccgaactgtgtttttcctttgttatggggtgaa-aaaatgaggtttccaccaattcggat 10840919  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 517 - 579
Target Start/End: Complemental strand, 18318423 - 18318361
Alignment:
Q  517 gaatcggagattgttggtgatggagagtaactgttttgagacgtcggagagagatttcaagca 579  Q
    |||||||||| ||||||||| || ||| |||||||| |||||  |||| ||||||||||||||    
T  18318423 gaatcggagactgttggtgacggtgagaaactgtttagagacaacggatagagatttcaagca 18318361  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 912 - 966
Target Start/End: Original strand, 42289623 - 42289677
Alignment:
Q  912 tttttagattttataatctcaattgagtttttcctttgttatgggatgaacaaaa 966  Q
    |||| |||||||||||||| |||||||||||||||||||  ||||||||| ||||    
T  42289623 ttttcagattttataatctgaattgagtttttcctttgtcttgggatgaaaaaaa 42289677  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 535 - 579
Target Start/End: Original strand, 32268817 - 32268861
Alignment:
Q  535 gatggagagtaactgttttgagacgtcggagagagatttcaagca 579  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||    
T  32268817 gatggagagtaactgtttggagacgatggagagagatttcaagca 32268861  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 517 - 577
Target Start/End: Complemental strand, 41900310 - 41900250
Alignment:
Q  517 gaatcggagattgttggtgatggagagtaactgttttgagacgtcggagagagatttcaag 577  Q
    |||||| ||| |||||||||||||||| |||||||| ||||||   |||||||||||||||    
T  41900310 gaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaag 41900250  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 41900854 - 41900804
Alignment:
Q  151 tggaaaaggatgaagaggtcaatgttggtctctgacggagagcagaagcaa 201  Q
    ||||||| ||| ||||  |||||||||||||||| ||||||||||||||||    
T  41900854 tggaaaatgataaagacctcaatgttggtctctggcggagagcagaagcaa 41900804  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 579
Target Start/End: Complemental strand, 15091398 - 15091347
Alignment:
Q  528 tgttggtgatggagagtaactgttttgagacgtcggagagagatttcaagca 579  Q
    |||||||||||||||| |||||||| ||||||  ||||||||| ||||||||    
T  15091398 tgttggtgatggagaggaactgtttggagacgagggagagagaattcaagca 15091347  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 9581450 - 9581497
Alignment:
Q  242 ctcttgaagaagcttacagtttttgaacaagtggaaaagcaattggtt 289  Q
    ||||| |||||| ||||| ||||||||||||||||||||||| |||||    
T  9581450 ctcttcaagaagattacaatttttgaacaagtggaaaagcaaatggtt 9581497  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 9587021 - 9587068
Alignment:
Q  242 ctcttgaagaagcttacagtttttgaacaagtggaaaagcaattggtt 289  Q
    ||||| |||||| ||||| ||||||||||||||||||||| |||||||    
T  9587021 ctcttcaagaagattacaatttttgaacaagtggaaaagcgattggtt 9587068  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 918 - 988
Target Start/End: Original strand, 4893110 - 4893180
Alignment:
Q  918 gattttataatctcaattgagtttttcctttgttatgggatgaacaaaatgaagttttcactaattcggat 988  Q
    ||||||| ||| | || ||| ||||||||||||||||||||||| |||||||  |||||  ||||||||||    
T  4893110 gattttaaaatttgaactgattttttcctttgttatgggatgaaaaaaatgagtttttctttaattcggat 4893180  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 6588654 - 6588601
Alignment:
Q  163 aagaggtcaatgttggtctctgacggagagcagaagcaataccttgattggtta 216  Q
    |||| |||||| ||||||||| |||||||||||||||||| |||  ||||||||    
T  6588654 aagacgtcaattttggtctctcacggagagcagaagcaatgcctgcattggtta 6588601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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