View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647-Insertion-7 (Length: 668)
Name: NF4647-Insertion-7
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647-Insertion-7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 8 - 668
Target Start/End: Complemental strand, 27927421 - 27926765
Alignment:
| Q |
8 |
tccagatcggtctccaaattgaagttaccaccaactccatcaacatcaacgaccttgtctgcatgacaagaaaacaattgcacaatgaattggaagtact |
107 |
Q |
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| T |
27927421 |
tccagattggtctccaaattgaagttaccaccaacaccatcaacatcaacgaccttgtctgcatgacaagaaaacaattgcacaatgaattggaagtact |
27927322 |
T |
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| Q |
108 |
aaaacgtggactacgtacgtctacatgacaaatctgaagtatatcctcgacaataaaaatcaagaggacactcaaactgagaattgaatgtgcatttatt |
207 |
Q |
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| T |
27927321 |
aaaacgtggactacgt----ctacatgacaaatctgaagtatatcctcgacaataaatatcaagtggacactcaaactgagaattgaatgtgcatttatt |
27927226 |
T |
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| Q |
208 |
tttgtatcgacacatgaaatcacatttgattttgttaagagatagatttctataagttgaaagatatcaaccactagtcactaattcatttcttttcaaa |
307 |
Q |
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| T |
27927225 |
tttgtatccacacatgaaatcacatttgattttgttaagagatagatttctatatgttgaaagatatcaaccactagtcactaattcatttcttttcaaa |
27927126 |
T |
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| Q |
308 |
ctgaaatcttcaattaggaaagttaaaaatgacaaattgatttggctttgaaatccttctgattttagttaattaaataaagaaatcaacacaaatcttg |
407 |
Q |
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| T |
27927125 |
ctgaaatcttcaattaggaaagttaaaaatgacaaattgatttggctttgaaatccttctgattttagttaattatataaagaaatcaacacaaatcttg |
27927026 |
T |
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| Q |
408 |
tccaaccaattattttaatgatttcaaacacaattcctcttacatctccaccaagctcacttttgttttcatggatccaaatctaatgttacattgacat |
507 |
Q |
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| T |
27927025 |
tccaatcaattattttaatgattccaaacacaattcctcttacatctccgccaagctcacttttgttttcatggatccaaatctaatgttacattgacat |
27926926 |
T |
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| Q |
508 |
ctcttgcttagggttttaaaaaatccatactttaaaatttaaaaatatccatcaaattccaatcgattctttttaatgatgattccaaataaatacaatg |
607 |
Q |
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| T |
27926925 |
ctcttgcttagggttttaaaaaatccatactttaaaatttaaaaatatccatcaaattccaatcgattctttttaatgatgattccaaataaatacaatg |
27926826 |
T |
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| Q |
608 |
ctaggggtttcattctaattaactctcaattcctcttatttgaatcttcatcaagctcaca |
668 |
Q |
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| T |
27926825 |
ctaggggtttcattctaattaactctcaattcctcttatttgaatcttcatcaagctcaca |
27926765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 324 - 408
Target Start/End: Complemental strand, 27932662 - 27932578
Alignment:
| Q |
324 |
ggaaagttaaaaatgacaaattgatttggctttgaaatccttctgattttagttaattaaataaagaaatcaacacaaatcttgt |
408 |
Q |
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| T |
27932662 |
ggaaagttaaaagcaacaaattgatttgactttgaaactcttctgattttagttaattaaataaagtaatcaacacaaatcttgt |
27932578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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