View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_high_2 (Length: 697)
Name: NF4647_high_2
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 465 - 692
Target Start/End: Complemental strand, 11088405 - 11088178
Alignment:
| Q |
465 |
caatttcaaattccgggctcctccccatcttcacctctttttccctcaactctttaccactaatccattgaaacaaatgccaactatgtctaccacaaca |
564 |
Q |
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| T |
11088405 |
caatttcaaattccgggctcctccccatcttcacctcttttttcctcgactctttaccactaatccattgaaacaaatgtcaactatgtctaccacaaca |
11088306 |
T |
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| Q |
565 |
tatcacaattggttattcctcaattccaccatcctcccttaaaaccacgtcaacagaaactataaatctctaatcctaccaccatacgccatatatatta |
664 |
Q |
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| T |
11088305 |
tatcacaattggttattcctcaattccaccatcctcccttaaaaccacgtcaacagaaactataaatctctaatcctaccaccatacgtcatatatatta |
11088206 |
T |
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| Q |
665 |
cgataaccacactcctcttcatctctct |
692 |
Q |
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|||||| ||||||||||||||| ||||| |
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| T |
11088205 |
cgataatcacactcctcttcatgtctct |
11088178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 190 - 436
Target Start/End: Complemental strand, 11088791 - 11088535
Alignment:
| Q |
190 |
tcttagttacgtgatggaaccattcatgtctacagaggaactgaatgtgaatcaatagaacaaggagttgataaatgtggtccatgactatagactttg- |
288 |
Q |
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||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |
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| T |
11088791 |
tcttatttacgtgatggaaccattcatgtctatagaggaactgaatgtgaatcaatagaacaaagagttgataaacgtggtccatgactatagagtttgg |
11088692 |
T |
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| Q |
289 |
---gaaacaacttcaaaaaatcattcagatcagtttcatttgatgatgaatgat---ttaattgataataatgaatcatgagaaaaaattatcgtatcat |
382 |
Q |
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| T |
11088691 |
aaagaaacaacttcaaaaaatcattcagatcagtgtcatttgatgatgaatgatttattaattgataataatgaatcaagagaaaaatttatcatatcat |
11088592 |
T |
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| Q |
383 |
atca---tacttcgcaaagttcggggttcaaatcccaactaccacgaaaaaattatc |
436 |
Q |
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| T |
11088591 |
atcatagtactttgcaaagtctggggttcaaatcccgaccaccacgaaaaaattatc |
11088535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 11088883 - 11088784
Alignment:
| Q |
19 |
tactcaaccttatgctctaatgacaaagttgtttaaggctacgtatttttatcgtgtgctgattttttgaatgcccatatcggtcataatccttcttatt |
118 |
Q |
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| T |
11088883 |
tactcaaccttatgctctaatgacaaagttgtttaaggctacgtatttttatcgtgtgctgatttttt-aatgcccatatcggtcataatctttcttatt |
11088785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 561 - 684
Target Start/End: Original strand, 24508674 - 24508797
Alignment:
| Q |
561 |
aacatatcacaattgg-ttattcctcaattccaccatcc-tcccttaaaaccacgtcaacagaaactataaatctctaatcctaccaccatacgccatat |
658 |
Q |
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|||||||||||||||| |||||||||||||||| ||||| | | ||||||| | |||||| |||||||||||| |||| |||||||||||| || | |
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| T |
24508674 |
aacatatcacaattggattattcctcaattccatcatcccttctttaaaactaattcaacataaactataaatcattaattctaccaccatacacc--ac |
24508771 |
T |
|
| Q |
659 |
atattacgataaccacactcctcttc |
684 |
Q |
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||||||||||||| |||||||||||| |
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| T |
24508772 |
atattacgataactacactcctcttc |
24508797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 2160375 - 2160310
Alignment:
| Q |
81 |
ttttttgaatgcccatatcggtcataatccttcttattttttggtgaagtttatggtctacacgagc |
147 |
Q |
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| T |
2160375 |
ttttttgaatgctcatattggtcataatccttctta-ttcttggtgaagcttatggtccacaagagc |
2160310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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