View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_high_24 (Length: 262)
Name: NF4647_high_24
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_high_24 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 4131 - 3939
Alignment:
| Q |
1 |
atatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttgctagct |
100 |
Q |
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| T |
4131 |
atatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttgctagct |
4032 |
T |
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| Q |
101 |
ggaattttaatcattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
193 |
Q |
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| T |
4031 |
ggaattttaaccattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
3939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 11787 - 11595
Alignment:
| Q |
1 |
atatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttgctagct |
100 |
Q |
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| T |
11787 |
atatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttgctagct |
11688 |
T |
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| Q |
101 |
ggaattttaatcattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
193 |
Q |
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| T |
11687 |
ggaattttaaccattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
11595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 6510107 - 6509915
Alignment:
| Q |
1 |
atatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttgctagct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
6510107 |
atatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttgctagct |
6510008 |
T |
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| Q |
101 |
ggaattttaatcattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
193 |
Q |
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| T |
6510007 |
ggaattttaaccattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
6509915 |
T |
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