View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4647_high_25 (Length: 254)
Name: NF4647_high_25
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_high_25 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 27928144 - 27927900
Alignment:
| Q |
10 |
gacatcatcagacagcaaaagagaaaagatgaatgttaacttccaaaaagaaaacatgcacgaacgaacttacagaatgtaaaaatcgataatcgtgtca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27928144 |
gacatcatcagacagcaaaagagaaaagatgaatgttaacttccaaaaagaaaacatgcacgaacgaacttacaaaatgtaaaaatcgataatcgtgtca |
27928045 |
T |
|
| Q |
110 |
ttgatgtatgtatttggttgtaattgatcaacatctctcttacttagcgtaacagcatctggatccccttttggatagacaagtttgtgaaaaggctcct |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27928044 |
ttgatgtatgtatttggttgtaattgatcaacatctctcttacttagcgtaacagcatctggatccccttttggatagacaagttcgtgaaaaggctcct |
27927945 |
T |
|
| Q |
210 |
gaaaactgtttcagacatgaaatgccagaattagccaccatacac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27927944 |
gaaaactgtttcagacatgaaatgccagaattagtcaccatacac |
27927900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 27933925 - 27933786
Alignment:
| Q |
47 |
aacttccaaaaagaaaacatgcacgaacgaacttacagaatgtaaaaatcgataatcgtgtcattgatgtatgtatttggttgtaattgatcaacatctc |
146 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||| |||||||||||| || |||||||| || |||||| |||| ||||| ||| |||||| | |
|
|
| T |
27933925 |
aacttccaaaaggaaaacatgcatacacaaacttacagaaggtaaaaatcgatgattgtgtcattcatacatgtatctggtcgtaatagattaacatcac |
27933826 |
T |
|
| Q |
147 |
tcttacttagcgtaacagcatctggatccccttttggata |
186 |
Q |
| |
|
|||||||||| | ||||||||| | |||||||| ||||| |
|
|
| T |
27933825 |
tcttacttagggaaacagcatccaggtcccctttgggata |
27933786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 46158784 - 46158640
Alignment:
| Q |
76 |
aacttacagaatgtaaaaatcgataatcgtgtcattgatgtatgtatttggttgtaattgatcaacatctctcttacttagcgtaacagcatctggatcc |
175 |
Q |
| |
|
||||||| | |||||||| || || || |||||||| | | |||| | |||| ||||| |||||| ||||||||| |||| | ||||||||||| |||| |
|
|
| T |
46158784 |
aacttactggatgtaaaagtcaattattgtgtcattaacgaatgtgtctggtcgtaatagatcaaaatctctcttgcttaaagaaacagcatctgcatcc |
46158685 |
T |
|
| Q |
176 |
ccttttggatagacaagtttgtgaaaaggctcctgaaaactgttt |
220 |
Q |
| |
|
||||| ||||||| | || | ||||||||||| |||||||||| |
|
|
| T |
46158684 |
cctttaggatagatgacttcatcaaaaggctcctcaaaactgttt |
46158640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University