View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_high_3 (Length: 695)
Name: NF4647_high_3
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 160 - 681
Target Start/End: Complemental strand, 3308580 - 3308059
Alignment:
| Q |
160 |
tgggttgtttccaatcaaaaacggagaatgaagaagccataacaagttgtaaagaccgtcattacttcatgaaacaggcggttgccgcccgtaacaactt |
259 |
Q |
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| T |
3308580 |
tgggttgtttccaatcaaaaatggagaatgaagaagccataacaagttgtaaagaccgtcattacttcatgaaacaggcggttgccgcccgtaacaactt |
3308481 |
T |
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| Q |
260 |
cgcggctgcgcattcctcctacgccgcctcactcaagaacaccggcgcggctctcatagattttgcacaaggagaacaacaacaaaatcttttattctct |
359 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308480 |
cgcggctgcgcattcctcctacgcagcctcactcaagaacaccggcgcggctctcatagattttgcacaaggagaacaacaacaaaatcttttattctct |
3308381 |
T |
|
| Q |
360 |
ccttcttatgatgttcctttgcctcctcctcctcttcctgatttgcctgctgctctccggcgtgctattaccatgccggagtttgaatcagacatggttg |
459 |
Q |
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| T |
3308380 |
ccttcttatgatgttcctttgcctcctcctcctcttcctgatttgcctgctgctctccggcgtgctattaccatgccggagtttgaatcagacatggttg |
3308281 |
T |
|
| Q |
460 |
tggaagaggaagaggatggtgatggtgatgaagaagttgttggaagagtgaaagagagagtgaatatggatatgattcaagtgttgagtgaagttgataa |
559 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308280 |
tggaagaggaagaggatggtgatggtgatgaagaagttgttggaagagtgaaagagagagtgaatatggatatgattcaagtgttgagtgaagttgataa |
3308181 |
T |
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| Q |
560 |
tcattttataatggcttctgaagctgctcgcggtgtttctgtgattcttcaggctactcgtcttcactttcattcaaatttttctgatactgctagaggt |
659 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308180 |
tcattttataatggcttctgaagctgctcgcggtgtttctgtgattcttcaggctactcgtcttcactttcattcaaatttttctgatactgctagaggt |
3308081 |
T |
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| Q |
660 |
aaccacaaaaatccatgttcat |
681 |
Q |
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| T |
3308080 |
aaccacaaaaatccatgttcat |
3308059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 3308727 - 3308616
Alignment:
| Q |
15 |
caataacattctccactaatacggcatcgtttcattgccttgacactgaagctttcaacccttccacactatcacgcacgttaagcactagccttcaata |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| ||| |
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| T |
3308727 |
caataacattctccactaatacggcatcgtttcattgccttgacactgaagctttcaacccttccacactatgacacacgttaagcactggccttctata |
3308628 |
T |
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| Q |
115 |
ttcaacaatttc |
126 |
Q |
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||||||||||| |
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| T |
3308627 |
ctcaacaatttc |
3308616 |
T |
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