View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4647_high_35 (Length: 227)
Name: NF4647_high_35
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_high_35 |
 | |
|
| [»] scaffold0902 (1 HSPs) |
| | |
|
| [»] scaffold1652 (1 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold1176 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0902 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 3797 - 3597
Alignment:
| Q |
20 |
ttggttacactgttgctgagttccgccgttgctagatcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtgg |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3797 |
ttggttgcactgttgctgagttccgccgttgctagatcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtgg |
3698 |
T |
|
| Q |
120 |
cgtctcctccggtacctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgcttttgctccatcatcgatctc |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||| |
|
|
| T |
3697 |
cgtctcctccggtacctctgaatagtgctccctcttcttcaccaactgcttcatctggttctcccgctgctgctcctgctgtcactccatcgtcgatctc |
3598 |
T |
|
| Q |
220 |
t |
220 |
Q |
| |
|
| |
|
|
| T |
3597 |
t |
3597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 3 - 219
Alignment:
| Q |
20 |
ttggttacactgttgctgagttccgccgttgctagatca---------tcccccaagtcttctccgtttccatcacctgctatttctccctccgctgact |
110 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3 |
ttggttgcactgtttctgagttccgccgttgctagatcaccaccatcatcacccaagtcttctccgtttccatcacctgctatttctccctccgctgact |
102 |
T |
|
| Q |
111 |
caccagtggcgtctcctccggtacctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgcttttgctccatc |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
103 |
caccagtggcgtctcctccggtaactgtgaatagtgctccctcttctttaacgactgcttcatctggttctcccgctgctgctcctgctgtctctccatc |
202 |
T |
|
| Q |
211 |
atcgatctctgctcctc |
227 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
203 |
gtcgatctctactcctc |
219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 165080 - 165213
Alignment:
| Q |
55 |
atcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtacctgtgaatagtgctccctct |
154 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
165080 |
atcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctgaatagtgctccctct |
165179 |
T |
|
| Q |
155 |
tcttcaccgactgcttcatctggttctcccgctg |
188 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||| |
|
|
| T |
165180 |
ccttcaccgtctgctttctctggttctcctgctg |
165213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 55 - 188
Target Start/End: Complemental strand, 14248646 - 14248513
Alignment:
| Q |
55 |
atcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtacctgtgaatagtgctccctct |
154 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
14248646 |
atcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctgaatagtgctccctct |
14248547 |
T |
|
| Q |
155 |
tcttcaccgactgcttcatctggttctcccgctg |
188 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||| |
|
|
| T |
14248546 |
ccttcaccgtctgctttctctggttctcctgctg |
14248513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 14317165 - 14317055
Alignment:
| Q |
110 |
tcaccagtggcgtctcctccggtacctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgcttttgctccat |
209 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||| | | ||||||| |
|
|
| T |
14317165 |
tcaccagtggcgtctcctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctgcagctcctgttgtcgctccat |
14317066 |
T |
|
| Q |
210 |
catcgatctct |
220 |
Q |
| |
|
||| ||||||| |
|
|
| T |
14317065 |
catggatctct |
14317055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 14317193 - 14317161
Alignment:
| Q |
55 |
atcatcccccaagtcttctccgtttccatcacc |
87 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
14317193 |
atcatcacccaagtcttctccgtttccatcacc |
14317161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 37257304 - 37257179
Alignment:
| Q |
95 |
tctccctccgctgactcaccagtggcgtctcctccggtacctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctc |
194 |
Q |
| |
|
||||| ||||||| |||||| ||||| |||||||| ||||||||||| | ||||| ||| |||| || ||||||| |||| |||||||||| | ||| |
|
|
| T |
37257304 |
tctccttccgctgtctcaccggtggcatctcctcccgtacctgtgaagaacgctccttctccttcccctcctgcttcctctgactctcccgctgtttctc |
37257205 |
T |
|
| Q |
195 |
ctgcttttgctccatcatcgatctct |
220 |
Q |
| |
|
||||| || |||||||||| |||||| |
|
|
| T |
37257204 |
ctgctgttactccatcatccatctct |
37257179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 37237871 - 37237814
Alignment:
| Q |
84 |
cacctgctatttctccctccgctgactcaccagtggcgtctcctccggtacctgtgaa |
141 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
37237871 |
cacctgcgatctctccctccgctgactcaccggtggcatctcctcccgtacctgtgaa |
37237814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 37245362 - 37245288
Alignment:
| Q |
55 |
atcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctcc |
129 |
Q |
| |
|
|||||| |||| || |||||||||||||||||| ||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
37245362 |
atcatcgcccatgttttctccgtttccatcaccaataatttctccctccgctaactcaccagtggcatctgctcc |
37245288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 37232851 - 37232797
Alignment:
| Q |
165 |
ctgcttcatctggttctcccgctgctgctcctgcttttgctccatcatcgatctc |
219 |
Q |
| |
|
||||||| |||||||| ||||| || ||||||||| || |||||||||||||||| |
|
|
| T |
37232851 |
ctgcttcctctggttcacccgccgccgctcctgctgttactccatcatcgatctc |
37232797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 1265 - 1320
Alignment:
| Q |
57 |
catcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||||| |
|
|
| T |
1265 |
catcccccaagtcttctccgtttccatctcctgcgatttctccctcagctaactca |
1320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University