View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_high_39 (Length: 219)
Name: NF4647_high_39
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 33606740 - 33606538
Alignment:
| Q |
1 |
tgttcgattatatctgatttttattctacataacatgactaagaataagaatataaattaatttcagggagcaagtgcagaaggtgcaccaaagaggctg |
100 |
Q |
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| T |
33606740 |
tgttcgattatatctgatttttattctacataacatgactaagaataagaatataaattaatttcagggagcaagtgcagaaggtgcaccaaagaggctg |
33606641 |
T |
|
| Q |
101 |
acattcgacgaaattcaaagcaaaacatatatggaagtcaaaggaaccggaacagcaaaccaatgtccaaccattgatggaggagtagactcattctcct |
200 |
Q |
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| T |
33606640 |
acattcgacgaaattcaaagcaaaacatatttggaagtcaaaggaaccggaacagcaaaccaatgtccaaccattgatggaggagtagactcattctcct |
33606541 |
T |
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| Q |
201 |
tca |
203 |
Q |
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||| |
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| T |
33606540 |
tca |
33606538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 63 - 203
Target Start/End: Original strand, 6962632 - 6962772
Alignment:
| Q |
63 |
ttcagggagcaagtgcagaaggtgcaccaaagaggctgacattcgacgaaattcaaagcaaaacatatatggaagtcaaaggaaccggaacagcaaacca |
162 |
Q |
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||||||||||||||||||||||||| |||||| | || || || |||||||| || ||||||||||| | ||||| |||||||| |||||||| ||||| |
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| T |
6962632 |
ttcagggagcaagtgcagaaggtgctccaaagcgactaacctttgacgaaatccagagcaaaacatacttagaagtgaaaggaacaggaacagctaacca |
6962731 |
T |
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| Q |
163 |
atgtccaaccattgatggaggagtagactcattctccttca |
203 |
Q |
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| T |
6962732 |
atgtccaacaattgaaggtggatccgactcattctccttca |
6962772 |
T |
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