View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_high_42 (Length: 214)
Name: NF4647_high_42
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_high_42 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold1176 (2 HSPs) |
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| [»] scaffold1652 (2 HSPs) |
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| [»] scaffold0902 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 165179 - 165319
Alignment:
| Q |
25 |
tccttcaccgtctgcttcctctggttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgct |
124 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
165179 |
tccttcaccgtctgctttctctggttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgct |
165278 |
T |
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| Q |
125 |
gctgctccttctgtgactccatcatcgatctctgctcctcc |
165 |
Q |
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| T |
165279 |
gctgctcctgctgtgactccatggtcgatctctactcctcc |
165319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 165283 - 165349
Alignment:
| Q |
51 |
ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcc |
117 |
Q |
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| T |
165283 |
ctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctcc |
165349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 14248547 - 14248407
Alignment:
| Q |
25 |
tccttcaccgtctgcttcctctggttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgct |
124 |
Q |
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| T |
14248547 |
tccttcaccgtctgctttctctggttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgct |
14248448 |
T |
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| Q |
125 |
gctgctccttctgtgactccatcatcgatctctgctcctcc |
165 |
Q |
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| T |
14248447 |
gctgctcctgctgtgactccatggtcgatctctactcctcc |
14248407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 14317121 - 14316969
Alignment:
| Q |
25 |
tccttcaccgtctgcttcctctggttctcctgctg------------tcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatt |
112 |
Q |
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| T |
14317121 |
tccttcaccgtctgcttcctctggttctcctgctgcagctcctgttgtcgctccatcatggatctctaccccaccatctcaaggaccatcgcctactatt |
14317022 |
T |
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| Q |
113 |
tctcctcctgctgctgctccttctgtgactccatcatcgatctctgctcctcc |
165 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
14317021 |
tctccttctgctgctgctcctgatgtgactccatcatcgatctctactcctcc |
14316969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 14248443 - 14248377
Alignment:
| Q |
51 |
ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcc |
117 |
Q |
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| T |
14248443 |
ctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctcc |
14248377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 46 - 160
Alignment:
| Q |
51 |
ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgctccttctgtgactccatcatc |
150 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46 |
ctcctgttgtcgatccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgctcctgctgtgactccatcatc |
145 |
T |
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| Q |
151 |
gatctctgctcctcc |
165 |
Q |
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||||||| ||||||| |
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| T |
146 |
gatctctactcctcc |
160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 124 - 190
Alignment:
| Q |
51 |
ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcc |
117 |
Q |
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|||||||||| ||||||| | ||||||||| ||||||||||||| |||||||||| | |||||||| |
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| T |
124 |
ctcctgctgtgactccatcatcgatctctactcctccatctcaagcaccatcgcctgcgatttctcc |
190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 263 - 379
Alignment:
| Q |
49 |
ttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgctccttctgtgactccatca |
148 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| ||||||||||||| |
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| T |
263 |
ttctcctgctgtcgctccatcgtcgatctctacccctccatctcaagcaccatcgcctacgatttctcctcttgctgccgctcctgctgtgactccatcg |
362 |
T |
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| Q |
149 |
tcgatctctgctcctcc |
165 |
Q |
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||||| ||| ||||||| |
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| T |
363 |
tcgatatctactcctcc |
379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 184 - 293
Alignment:
| Q |
51 |
ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactat---ttctcctcctgctgctgctccttctgtgactccatc |
147 |
Q |
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||||||||||| ||||||| | ||||||||| ||||||||||||| |||||||||||| || |||||||||||||||| ||||| |||| ||||||| |
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| T |
184 |
ctcctgctgtctctccatcgtcgatctctactcctccatctcaagtaccatcgcctacgatttcttctcctcctgctgcttctcctgctgtcgctccatc |
283 |
T |
|
| Q |
148 |
atcgatctct |
157 |
Q |
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||||||||| |
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| T |
284 |
gtcgatctct |
293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 3625 - 3543
Alignment:
| Q |
51 |
ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgctcct |
133 |
Q |
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||||||||||| ||||||| | |||||||| ||||||| |||||| |||||||||||| |||| | |||| ||||||||||| |
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| T |
3625 |
ctcctgctgtcactccatcgtcgatctctatccctccaactcaagcaccatcgcctacaatttttactccctctgctgctcct |
3543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 3532 - 3466
Alignment:
| Q |
51 |
ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcc |
117 |
Q |
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|||||||||| ||||||| | ||||||||| ||||||||||||| |||| ||||| | |||||||| |
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| T |
3532 |
ctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccaacgcctgcgatttctcc |
3466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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