View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_low_1 (Length: 788)
Name: NF4647_low_1
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 390 - 753
Target Start/End: Original strand, 31936152 - 31936515
Alignment:
| Q |
390 |
tcacttatttttaagagcagttttggtaacaataatatcatcatgagtcaggaacaaccaaggagacatgagcaagaaccaataaaatacggtgatgtgt |
489 |
Q |
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| T |
31936152 |
tcacttatttttaagagcagttttggtaacaataatatcatcatgagtcaggaacaaccaaggagacatgagcaagaaccaataaaatacggtgatgtgt |
31936251 |
T |
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| Q |
490 |
tcaatgtgtctggtgagttatcatcacaacccattgcaccaagagatgctgctaccatgcaatctgcagaatacagaacatttggccagactagaaaaga |
589 |
Q |
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| T |
31936252 |
tcaatgtgtctggtgagttatcatcacaacccattgcaccaagagatgctgctaccatgcaatctgcagaatatagaacatttggccagactagaaaaga |
31936351 |
T |
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| Q |
590 |
tgggccagcttctctcatgacttctgctgcccnnnnnnntgaggatgctggtttcatcaaacataacactgctacaaacattgcaagaaatgaaggtgtt |
689 |
Q |
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| T |
31936352 |
tgggcctgcttctctcatgacttctgctgcccaaaaaaatgaggatgctggtttcatcaaacataacactgctacaaacattgcaagaaatgaaggtgtt |
31936451 |
T |
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| Q |
690 |
gctgtttcagaaacttatgatgggggcaaacgtgtcatcactgagactcttggtggacaggcaa |
753 |
Q |
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| T |
31936452 |
gctgtttcagaaacttatgatgggggcaaacgtgtcatcactgagactcttggtggacaggcaa |
31936515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 427 - 753
Target Start/End: Original strand, 31933215 - 31933541
Alignment:
| Q |
427 |
tcatcatgagtcaggaacaaccaaggagacatgagcaagaaccaataaaatacggtgatgtgttcaatgtgtctggtgagttatcatcacaacccattgc |
526 |
Q |
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| T |
31933215 |
tcatcatgagtcaagagaagccacgaagacctgagcaagaaccaataaaatacggtgatatattcaacgtgtctggtgatttatcatcacagcctattgc |
31933314 |
T |
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| Q |
527 |
accaagagatgctgctaccatgcaatctgcagaatacagaacatttggccagactagaaaagatgggccagcttctctcatgacttctgctgcccnnnnn |
626 |
Q |
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| T |
31933315 |
accaagagatgctgcaaccatgcaatcagcagaagatagaacattggaccatgctcgaaaagatgggcctgcttcactcatgacttctgctgctcaaaag |
31933414 |
T |
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| Q |
627 |
nntgaggatgctggtttcatcaaacataacactgctacaaacattgcaagaaatgaaggtgttgctgtttcagaaacttatgatgggggcaaacgtgtca |
726 |
Q |
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| T |
31933415 |
aatgaggatgctggtttcattgataataacactgcaacaaatatagcaagaaatgaaggtgttgctgtttcagaaattaataatggaggcaaacgtgtta |
31933514 |
T |
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| Q |
727 |
tcactgagactcttggtggacaggcaa |
753 |
Q |
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| T |
31933515 |
tcacagagacccttggtggacaggcaa |
31933541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 31935918 - 31936045
Alignment:
| Q |
128 |
gatactatactatattgtatcaacgaatcactctttttctcaatgcatgccatatgaagaaacatcttgattcttattgagaacctgccatgtattctcc |
227 |
Q |
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| T |
31935918 |
gatacgatactatattgtatcaacgaatcactctttttctcaatgcatgccatatgaagaaacatcttgattcttattgagaacttgccatgtattctcc |
31936017 |
T |
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| Q |
228 |
acctgtcgctattcgaacatgcggttgt |
255 |
Q |
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| T |
31936018 |
acctgtcgctatttgaacatgcggttgt |
31936045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 31936044 - 31936114
Alignment:
| Q |
280 |
gtgtccttaaccgcttgcaatgcaatgaatataactctcaccgtatcaatgtcacgcaccttcactcctaa |
350 |
Q |
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| T |
31936044 |
gtgtccttaaccgcttgcaatgcaatgaatataactctcaccgtatcaatgtcacgcaccttcactcctaa |
31936114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 31932837 - 31932884
Alignment:
| Q |
128 |
gatactatactatattgtatcaacgaatcactctttttctcaatgcat |
175 |
Q |
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| T |
31932837 |
gatactatactatattgtatcaatgaatcactctctttctcaatgcat |
31932884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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