View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_low_10 (Length: 476)
Name: NF4647_low_10
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 430; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Complemental strand, 376959 - 376522
Alignment:
| Q |
19 |
aaaagccttctcacaagcaacgtctgggaattcaatggaaagacagttaggatcgcatccaagaactacagaacaaatgttatcaaatgtgaagcgattg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
376959 |
aaaagccttctcacaagcaacgtctgggaagtcaatggaaagacagttaggatcgcatccaagaactacagaacaaatgttatcaaatgtgaagcgattg |
376860 |
T |
|
| Q |
119 |
aagacatcttgtaaatcaaccactgacccttgttgttgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttgaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
376859 |
aagacatcttgtaaatcaaccactgacccttgttgttgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttgaa |
376760 |
T |
|
| Q |
219 |
acaattcaaagcttctttgtttgaaaatagagtgaagaagagacctattatatttccatgtctttgaatcagcgttgaatattccatctccaaaggcttc |
318 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
376759 |
acaattcaaagcttctttgtttaaaaatagagtgaagaagagacctattatatttccatgtctttgaatcagcgttgaatattccatctccaaaggcttc |
376660 |
T |
|
| Q |
319 |
aaatatctcatgaaattcatgacccttcacataattgtcaaaacgcttgctcattatgtgatgcacattcatggggtcactagtgatgaaataattcatt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
376659 |
aaatatctcatgaaattcatgacccttcacataattgtcaaaacgcttgctcattatgtgatgcacattcatggggtcactagtgatgaaataattcatt |
376560 |
T |
|
| Q |
419 |
ttggtaaaccaaggtcccatgaactcaccactacctct |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
376559 |
ttggtaaaccaaggtcccatgaactcaccactacctct |
376522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 347537 - 347964
Alignment:
| Q |
19 |
aaaagccttctcacaagcaacgtctgggaattcaatggaaagacagttaggatcgcatccaagaactacagaacaaatgttatcaaatgtgaagcgattg |
118 |
Q |
| |
|
|||||| |||||||| || || || || || ||||| |||||||| || ||||| |||||||||||||| ||||||||||| | |||||||| |||||| |
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| T |
347537 |
aaaagctttctcacacgcgacatcgggaaaatcaatcgaaagacaattgggatcacatccaagaactacggaacaaatgttgttgaatgtgaaacgattg |
347636 |
T |
|
| Q |
119 |
aagacatcttgtaaatcaaccactgacccttgttgttgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttgaa |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
347637 |
aagacatcttgtaaatccaccactgacccttgttgttgtacatggtcaaacaaaggaatcaaacttctctccaacttgttttgaatgattttcttttgaa |
347736 |
T |
|
| Q |
219 |
acaattcaaagcttctttgtttgaaaatagagtgaagaagagacctattatatttccatgtctttgaatcagcgttgaatattccatctccaaaggcttc |
318 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
347737 |
acaattcaaaatctctttgtttgaaaatagagtgaaaaagagacctattgtatttccatttctccgaatcagcgttgaatattccatctccaaaggcttc |
347836 |
T |
|
| Q |
319 |
aaatatctcatgaaattcatgacccttcacataattgtcaaaacgcttgctcattatgtgatgcacattcatggggtcactagtgatgaaataattcatt |
418 |
Q |
| |
|
||| |||||||||||||| |||||||| |||||||| ||||||| ||||||||| ||||||||||| ||||| ||||||||||| | ||||| ||||| |
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| T |
347837 |
aaaaatctcatgaaattcttgaccctttacataattatcaaaacacttgctcatcatgtgatgcacgttcatagggtcactagtaaccaaatagttcatg |
347936 |
T |
|
| Q |
419 |
ttggtaaaccaaggtcccatgaactcac |
446 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
347937 |
ttggtaaaccaaggtcccatgaactcac |
347964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 446
Target Start/End: Original strand, 356197 - 356623
Alignment:
| Q |
20 |
aaagccttctcacaagcaacgtctgggaattcaatggaaagacagttaggatcgcatccaagaactacagaacaaatgttatcaaatgtgaagcgattga |
119 |
Q |
| |
|
|||||||||||||| || || || || || |||||||||||||| |||||||| ||||||||||| || ||||||||||| || |||||||| ||||||| |
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|
| T |
356197 |
aaagccttctcacacgcgacatcgggaaaatcaatggaaagacaattaggatcacatccaagaaccacggaacaaatgttgtcgaatgtgaaacgattga |
356296 |
T |
|
| Q |
120 |
agacatcttgtaaatcaaccactgacccttgttgttgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttgaaa |
219 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
356297 |
agacatcttgtaaatccaccactgagccttgttgttgtacatggtccaacaaaggaatcaaacttttctccaacttgttttgaatgattttcttttgaaa |
356396 |
T |
|
| Q |
220 |
caattcaaagcttctttgtttgaaaatagagtgaagaagagacctattatatttccatgtctttgaatcagcgttgaatattccatctccaaaggcttca |
319 |
Q |
| |
|
|| |||||| |||| ||| ||||||||||||| |||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
356397 |
catttcaaaatctcttattttcaaaatagagtgaaaaagagacctattgtatttccatgtctccgaatcagtgttgaatattccatctccaaaggcttca |
356496 |
T |
|
| Q |
320 |
aatatctcatgaaattcatgacccttcacataattgtcaaaacgcttgctcattatgtgatgcacattcatggggtcactagtgatgaaataattcattt |
419 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||| |||||| | |||||||||| || |||||||||||||||| ||||| ||||| |
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|
| T |
356497 |
aatatctcatgatattcatgacccttaacataattgtcaaaagacttgcttaacatgtgatgcaagttgatggggtcactagtgaccaaatagttcatgc |
356596 |
T |
|
| Q |
420 |
tggtaaaccaaggtcccatgaactcac |
446 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
356597 |
tggtaaaccaaggtcccatgaactcac |
356623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 337178 - 336917
Alignment:
| Q |
19 |
aaaagccttctcacaagcaacgtctgggaattcaatggaaagacagttaggatcgcatccaagaactacagaacaaatgttatcaaatgtgaagcgattg |
118 |
Q |
| |
|
|||||||||||| || |||| || ||||| |||||||||||||| ||||| || |||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
337178 |
aaaagccttctcgcacacaacttcagggaaatcaatggaaagacaattagggtcatgtccaagaattattgaacaaatgttatcaaatgtgaagcgattg |
337079 |
T |
|
| Q |
119 |
aagacatcttgtaaatcaaccactgaccc---ttgttgttgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctctt |
215 |
Q |
| |
|
|| || ||||||||||| ||||| ||||| ||||||||| ||||| | ||| ||||||||||| | |||| | ||||| |||||||||||||||| |
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|
| T |
337078 |
aacacgtcttgtaaatcgaccaccgacccattttgttgttgaacatgattcaataaaggaatcaatgatttctcaactttgttgtgaatgattttctctt |
336979 |
T |
|
| Q |
216 |
gaaacaattcaaagcttctttgtttgaaaatagagtgaagaagagacctattatatttccat |
277 |
Q |
| |
|
|||| ||||||||||||||||||||| | | | || |||||| |||||| ||||||||| |
|
|
| T |
336978 |
gaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatttccat |
336917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 90 - 277
Target Start/End: Complemental strand, 341145 - 340955
Alignment:
| Q |
90 |
aacaaatgttatcaaatgtgaagcgattgaagacatcttgtaaatcaaccactgacccttgttgttgt---acatggtccaacaaaggaatcaaacttct |
186 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||||||||||||| ||||| ||||||| ||||||| ||||| | ||| | |||||||| | | |
|
|
| T |
341145 |
aacaaatgttatcgaatgtgaatcgattgaacacatcttgtaaatcgaccaccgaccctttttgttgtagaacatgattcaatattggaatcaatgattt |
341046 |
T |
|
| Q |
187 |
ctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttgaaaatagagtgaagaagagacctattatatttccat |
277 |
Q |
| |
|
||| | ||||| ||||| || ||||||||||| ||||||||||||||||||||| | | | || |||||| |||||| ||||||||| |
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|
| T |
341045 |
ctcaactttgttgtgaattatcttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatttccat |
340955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 332191 - 332126
Alignment:
| Q |
92 |
caaatgttatcaaatgtgaagcgattgaagacatcttgtaaatcaaccactgacccttgttgttgt |
157 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
332191 |
caaatgttatcgaatgtgaagcgattgaatacatcttgtaaatcgaccatcgaccctttttgttgt |
332126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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