View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_low_11 (Length: 461)
Name: NF4647_low_11
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 6 - 442
Target Start/End: Complemental strand, 43187536 - 43187121
Alignment:
| Q |
6 |
agaagcaaaggcatgcagtatggattcaaggaactagatcaggaaacagtatctccagcttcctcagatcaaggtaaaatcattgataattccaaggttc |
105 |
Q |
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| T |
43187536 |
agaaacaaagacatgcagtatggattcaaggaactagatcaggaaacagtatctccagcttcctcagatcaaggtaaaatcattgataattccaaggttc |
43187437 |
T |
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| Q |
106 |
attccacaaaaaggactaatattgatcaatatgatccttgcttcagcattactactcagaattcttcttcttctactgaatttggtttcaagcttatctc |
205 |
Q |
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| T |
43187436 |
attccacaaaaaggactaatattgatcaatatgatccttgcttcagcattactgctcagaattcttcttcttctactgaatttggtttcaagcttatctc |
43187337 |
T |
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| Q |
206 |
agagaaaccaccaaagtcaaagaaaccaagatgggataataagtgtcctggttcatcaaatatcaatttccagcaaccaaattcatcagtttcattgtca |
305 |
Q |
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| T |
43187336 |
agagaaaccaccaaagtcaaagaaaccaagatgggataataagtgtcctggttcatcaaatatcaatttccagcaaccaaattc---------------- |
43187253 |
T |
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| Q |
306 |
aattcatcctttgaagagcctgatccagaggcaatagcacaaatgaaggaaatgatatatagagctgcagcatttaggccggtgacgaatttgggtttgg |
405 |
Q |
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| T |
43187252 |
-----atcctttgaagagcctgatccagaggcaatagcacaaatgaaggaaatgatatatagagctgcagcatttaggccggtgacgaatttgggtttgg |
43187158 |
T |
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| Q |
406 |
aagtgatggaaaagcctaaaaggaagaatgttaagat |
442 |
Q |
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| T |
43187157 |
aagtgatggaaaagcctaaaaggaagaatgttaagat |
43187121 |
T |
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Back To:
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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 382
Target Start/End: Complemental strand, 5040933 - 5040867
Alignment:
| Q |
316 |
ttgaagagcctgatccagaggcaatagcacaaatgaaggaaatgatatatagagctgcagcatttag |
382 |
Q |
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| T |
5040933 |
ttgaagaagctgatccagaagcaatagcacaaatgaaggaaatgatgtatagagcagcagcatttag |
5040867 |
T |
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