View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_low_12 (Length: 460)
Name: NF4647_low_12
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Original strand, 14335891 - 14336319
Alignment:
| Q |
17 |
atgaaagacttaagtggtacatgcaaatctacccttctcctaataatcgcgggccgagtaaaagacaaagatttcaatccaaaaactatctcaatcaatg |
116 |
Q |
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| T |
14335891 |
atgaaagacttaagtggtacaagcaaatctacccttctcctaataatcgcgggccgagtaaaagacaaagatttcaatccaaaaactatctcaatcaatg |
14335990 |
T |
|
| Q |
117 |
atcaccctatgagtactccatctcaattaagaacaatatgtggctttgtttcgcaagaagataacttgcttccatttctaacagtgaaagaaactttgct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14335991 |
atcaccctatgagtactccatctcaattaagaacaatatgtggctttgtttcacaagaagataacttgcttcgatttctaacagtgaaagaaactttgct |
14336090 |
T |
|
| Q |
217 |
atttagtgcaaagtttaggctaaaagaaatgacaccaaaagaaagagaattaagagtagaaaacttaatgcaagagttaggactttttcatgtagcacat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14336091 |
atttagtgcaaagtttaggctaaaagaaatgacaccaaaagaaagagaattaagagtagaaaacttaatgcaagagttaggactttttcatgtagcacat |
14336190 |
T |
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| Q |
317 |
agttttgttggtgatgaagaaaatagaggtgtttctggtggtgaaagaaaaagggtatcaattggtgttgatatgattcacaatccaccaattttagtct |
416 |
Q |
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| T |
14336191 |
agttttgttggtgatgaagaaaatagaggtgtttctggtggtgaaagaaaaagggtatcaattgttgttgatatgattcacaatccaccaattttagtct |
14336290 |
T |
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| Q |
417 |
tggatgaaccaacattaggacttgatagt |
445 |
Q |
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| T |
14336291 |
tggatgaaccaacattaggacttgatagt |
14336319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 29 - 445
Target Start/End: Original strand, 48279503 - 48279919
Alignment:
| Q |
29 |
agtggtacatgcaaatctacccttctcctaataatcgcgggccgagtaaaagacaaagatttcaatccaaaaactatctcaatcaatgatcaccctatga |
128 |
Q |
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||||| ||| ||||||| |||||||| |||||||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
48279503 |
agtggcacaggcaaatccacccttcttagaataatcgcggggcgaataaaagacaaagatttcaaccccaaaactatctcaatcaatgatcaccctatga |
48279602 |
T |
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| Q |
129 |
gtactccatctcaattaagaacaatatgtggctttgtttcgcaagaagataacttgcttccatttctaacagtgaaagaaactttgctatttagtgcaaa |
228 |
Q |
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||||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
48279603 |
gtactccatctcagttaagaaaaatatgtggctttgtttcacaagaagacaacttgcttccacttctaacagtgaaagaaactttgctatttggtgcaaa |
48279702 |
T |
|
| Q |
229 |
gtttaggctaaaagaaatgacaccaaaagaaagagaattaagagtagaaaacttaatgcaagagttaggactttttcatgtagcacatagttttgttggt |
328 |
Q |
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| T |
48279703 |
gtttaggctaaaagaaatgacaccaaaagaaagagaattaagagtagaaaacttaatgcaagagttaggactttttcatgtagcacatagttttgttggt |
48279802 |
T |
|
| Q |
329 |
gatgaagaaaatagaggtgtttctggtggtgaaagaaaaagggtatcaattggtgttgatatgattcacaatccaccaattttagtcttggatgaaccaa |
428 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48279803 |
gatgatgaaaatagaggtgtctctggtggtgaaagaaaaagggtatcaattggtgttgatatgattcacaatccaccaattttagtcttggatgaaccaa |
48279902 |
T |
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| Q |
429 |
cattaggacttgatagt |
445 |
Q |
| |
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||| ||||||||||||| |
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| T |
48279903 |
catcaggacttgatagt |
48279919 |
T |
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