View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_low_14 (Length: 452)
Name: NF4647_low_14
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 25996417 - 25996850
Alignment:
| Q |
1 |
gaggggaaactctatgggagcttgcaaagaaaacctatggagcctttgcaaactcaaagaaatgcaacaaacatttttcagatatggcagacttaaactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25996417 |
gaggggaaactctatgggagcttgcaaagaaaacctatggagcctttgcaaactcaaagaaatgcaacaaacatttttcagatatggcagacttaaattt |
25996516 |
T |
|
| Q |
101 |
tctgatgtgcaaggccatagagaatccagggttgacaccatcttcttcgttaagaacggcgatcatgtcggtgttcgaggacacggttatagacgacagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25996517 |
tctgatgtgcaaggccatagagaatccagggttgacaccatcttcttcgttaagaacggcgatcatgtcggtgttcgaggacacggttatagacgacagt |
25996616 |
T |
|
| Q |
201 |
ataaagaagcaaagagaggttggtgtagaggactatatgggatgtgcttctgttcatggggtgggtccatctattgccatttttgataccataagagatg |
300 |
Q |
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| T |
25996617 |
ataaagaagcaaagagaggttggtgtagaggactatatgggatgtgcttctgttcatggggtgggtccatctattgccatttttgataccataagagatg |
25996716 |
T |
|
| Q |
301 |
gaagcttggattgtgcttgtgtgtatccagcaccgttacattctagggaacagatgcaagaggttgttggtaagatgaaggctatccttattgatgctgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25996717 |
gaagcttggattgtgcttgtgtgtatccagcaccattacactccagagaacagatgcaagaggttgttggtaagatgaaggctatccttattgatgctgc |
25996816 |
T |
|
| Q |
401 |
taagacattcaagaaatgaaattaatctcatcat |
434 |
Q |
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| T |
25996817 |
taagacattcaagaaatgaaattaatctcatcat |
25996850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 26005954 - 26006031
Alignment:
| Q |
65 |
caacaaacatttttcagatatggcagacttaaactttctgatgtgcaaggccatagagaatccagggttgacaccatc |
142 |
Q |
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|||||| ||||| ||||||||||| ||| | ||||| || |||||||||||||| || || || || ||||||||||| |
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| T |
26005954 |
caacaagcatttctcagatatggctgacctgaacttcctcatgtgcaaggccattgataaccctggtttgacaccatc |
26006031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 394
Target Start/End: Complemental strand, 42557092 - 42556913
Alignment:
| Q |
215 |
agaggttggtgtagaggactatatgggatgtgcttctgttcatggggtgggtccatctattgccatttttgataccataagagatggaagcttggattgt |
314 |
Q |
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||||||||| ||||||||||| ||||| |||||||| |||||||| |||| |||||||| | |||||||| |||||||| |||||||| | |||||| |
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| T |
42557092 |
agaggttggagtagaggactacatggggtgtgcttcggttcatggtttgggaccatctatgggtatttttgacaccataagggatggaaggctagattgt |
42556993 |
T |
|
| Q |
315 |
gcttgtgtgtatccagcaccgttacattctagggaacagatgcaagaggttgttggtaagatgaaggctatccttattga |
394 |
Q |
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| || ||||||||||| ||||| || |||| ||||| ||||||||| || || |||||||||||||| |||||||| |
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| T |
42556992 |
gtgtgcgtgtatccagccccgttgcacgctagagaacaaatgcaagagcttattaacaagatgaaggctattcttattga |
42556913 |
T |
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