View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_low_15 (Length: 449)
Name: NF4647_low_15
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 27927847 - 27927417
Alignment:
| Q |
1 |
ttattgatttcacatccacctctaaccgtgatgaaagtaatttacaaagaccaaaaatattagaggatttataaatatttattttgtacttactcttgga |
100 |
Q |
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| T |
27927847 |
ttattgatttcacatccacctctaaccgtgatgaaagtaatttacgaagaccaaaaatattagaggatttataaatatttattttgtacttactcttgga |
27927748 |
T |
|
| Q |
101 |
agtagcttgttagtctaggtgaaaaagttgtgctgccttccacatccatactatgagtgaatacattttctgcaatatcagactccaaccttgatgaatt |
200 |
Q |
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| T |
27927747 |
agtagcttgttagtctaggtgaaaaagttgtgctgccttccacatccatactatgagtgaatacattttctgcaacatcagactccaaccttgatgaatt |
27927648 |
T |
|
| Q |
201 |
aatgtcaaccgattccgtctgcaataagaaaga-aaaaatgacatagattagtactacaatacaactaaatctctaccttaggatgtaaacttacaaata |
299 |
Q |
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||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27927647 |
aatgtcaactgattccgtctgcaataagaaagacaaaaacgacatagattagtcctacaatacaactaaatctctaccttaggatgtaaacttacaaata |
27927548 |
T |
|
| Q |
300 |
aagtttaccttcggataatatacttgacttgactgtagtgaagatacaccaccactggtatcttgtttcacagcttccaactcatcaaaaatctttttga |
399 |
Q |
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| T |
27927547 |
aagtttaccttcggataatatacttgacttgactgtagtgaagatacaccaccactggtatcttgtttcacagcttccaactcttcaaaaatctttttga |
27927448 |
T |
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| Q |
400 |
aatcaatggtggtgcttcccaacgtgtccag |
430 |
Q |
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| T |
27927447 |
aatcaatggtggtgcttcccaacgtgtccag |
27927417 |
T |
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