View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_low_16 (Length: 388)
Name: NF4647_low_16
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 7817499 - 7817137
Alignment:
| Q |
11 |
catcatcaccacatcggtggctcctcatcactattccgccccatctatgtgatccaactacgaagactgtgaatacgcaacataggttacggttcacaca |
110 |
Q |
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| T |
7817499 |
catcatcaccacagtggtggctcctcatcgctattccgccccatctatgtgatccaaccacgaagactgtgaatacgcatcataggttagggttcacaca |
7817400 |
T |
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| Q |
111 |
tgggcatggctttctcatgtccacgacgttaggtggaagagaaccagataataatattctcctaaaaccagtgaatcaacaatgttcatttgttcaagtt |
210 |
Q |
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| T |
7817399 |
tgggcatggctttctcatgtccacgaccttgtgtggaagacaaccagataataatattctcctaaaaccagtgaatcgacaatgttcatttgttcaagtt |
7817300 |
T |
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| Q |
211 |
ctttcaccatcattgtgcgtcgtcagtgatcctcttcctcgacctgttgtcaaaggatattttctaccgatcaaaattacagaagaggtttatgtaaagg |
310 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
7817299 |
ctttcaccatcattgtgcgtcgttagtgatcctcttcctcgacctgttgtcaaaggatattttttaccgatcaaaattacagaagaggtttatgtgaagg |
7817200 |
T |
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| Q |
311 |
gaattaaagcatgtaagacaaatctagatgggagacttgttttgagcacgggagataaatcgtg |
374 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
7817199 |
gaattaaagcatgtaagac-aatctacatgggagacttgttttgagcacgggagataaaccgtg |
7817137 |
T |
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