View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4647_low_17 (Length: 379)

Name: NF4647_low_17
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4647_low_17
NF4647_low_17
[»] chr6 (9 HSPs)
chr6 (19-367)||(33386145-33386493)
chr6 (26-359)||(33282691-33283029)
chr6 (26-307)||(33260395-33260681)
chr6 (208-344)||(33416915-33417051)
chr6 (226-332)||(33281666-33281772)
chr6 (309-359)||(33260964-33261014)
chr6 (225-335)||(33397402-33397512)
chr6 (236-335)||(33408324-33408423)
chr6 (66-128)||(2732970-2733032)
[»] scaffold0428 (3 HSPs)
scaffold0428 (26-334)||(11248-11561)
scaffold0428 (26-358)||(4451-4784)
scaffold0428 (226-332)||(12480-12586)
[»] chr2 (1 HSPs)
chr2 (27-337)||(17442721-17443035)
[»] chr4 (1 HSPs)
chr4 (33-93)||(26275540-26275600)
[»] chr7 (1 HSPs)
chr7 (27-91)||(6894313-6894377)
[»] chr5 (1 HSPs)
chr5 (27-55)||(9130954-9130982)


Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 33386145 - 33386493
Alignment:
Q  19 ctatagagagtggaatttgaacaaattgctattgttcaaaattacgatatttggttcaaaatgttgtgaaatagcctctatagtggcgctataaaactat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33386145 ctatagagagtggaatttgaacaaattgctattgttcaaaattacgatatttggttcaaaatgttgtgaaatagcctctatagtggcgctataaaactat 33386244  T
Q  119 tgtgtagcggtaccaaattgttactttcggcgatacaagattgacaacactaattcagtcaagcaagcatgatttaaaaatgaattgagcctttattcaa 218  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33386245 tgtgtagcggtaacaaattgttactttcggcgatacaagaatgacaacactaattcagtcaagcaagcatgatttaaaaatgaattgagcctttattcaa 33386344  T
Q  219 gattttctcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33386345 gattttctcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgca 33386444  T
Q  319 aaggaaatattattcggtaagttaatcggaaaaaccatgtatatctgtg 367  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33386445 aaggaaatattattcggtaagttaatcggaaaaaccatgtatatgtgtg 33386493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 26 - 359
Target Start/End: Original strand, 33282691 - 33283029
Alignment:
Q  26 gagtggaatttgaacaaattgctattgttcaaaattacgatatttggttcaaaatgttgtgaaatagcctctatagtggcgctataaaactattgtgtag 125  Q
    ||||||| | |||||||||||||||| |||| |||||||||| || || ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33282691 gagtggactatgaacaaattgctattattcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatagtggcgctataaaactattgtgtag 33282790  T
Q  126 cggtaccaaattgttactttcggcgatacaagattgacaacactaattcagtcaagcaagcatgatttaaaaatgaattgagc-----ctttattcaaga 220  Q
    |||||  |||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||| ||||| |||||| ||| |||     || |||||||||    
T  33282791 cggtaagaaattgttactttcagcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgcattaagcataacctatattcaaga 33282890  T
Q  221 ttttctcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaa 320  Q
    || ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  33282891 ttctctcagaagacaaatcaccactttgtcctgtcaaactagcaccgatctcattgttctctggaacagctctatcattgtcacctatttgaaatgcaaa 33282990  T
Q  321 ggaaatattattcggtaagttaatcggaaaaaccatgta 359  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33282991 ggaaatattattcggtaagttaatcggaaaaaccatgta 33283029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 26 - 307
Target Start/End: Original strand, 33260395 - 33260681
Alignment:
Q  26 gagtggaatttgaacaaattgctattgttcaaaattacgatatttggttcaaaatgttgtgaaatagcctctatagtggcgctataaaactattgtgtag 125  Q
    ||||||||| ||||||||||||||||||||| |||||||||| || || ||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  33260395 gagtggaatatgaacaaattgctattgttcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatagtggtgctataaaactattgtgtag 33260494  T
Q  126 cggtaccaaattgttactttcggcgatacaagattgacaacactaattcagtcaagcaagcatgatttaaaaatgaattgag-----cctttattcaaga 220  Q
    |||||  ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||| |||||||||| ||     |||||||||||||    
T  33260495 cggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgaattaagcataacctttattcaaga 33260594  T
Q  221 ttttctcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcaccta 307  Q
    || ||||||||||||||||||| |||||||| ||||||||||||  |||||||||||||||||||||||||||| ||||||||||||    
T  33260595 ttctctcagaagacaaatcaccactttgtcctgtcaaactagcactgatctcattgttctctggaacagctccatcattgtcaccta 33260681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 344
Target Start/End: Original strand, 33416915 - 33417051
Alignment:
Q  208 cctttattcaagattttctcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcaccta 307  Q
    |||||||||||| ||| ||| |  || ||||||||  |||||||||||||| ||||| | |||||||||||||||||||||||| || | |||||| |||    
T  33416915 cctttattcaagctttcctcgggggataaatcaccattttgtccagtcaaattagcatcaatctcattgttctctggaacagctgcaacgttgtcatcta 33417014  T
Q  308 tttgaaatgcaaaggaaatattattcggtaagttaat 344  Q
    ||||||||||||| ||||||||||| | |||||||||    
T  33417015 tttgaaatgcaaaagaaatattatttgttaagttaat 33417051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 332
Target Start/End: Original strand, 33281666 - 33281772
Alignment:
Q  226 tcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaaggaaa 325  Q
    |||| |||||||||| | ||||||||| ||||||||||| ||||||||||||| |||||||||||| || |||||||| ||| ||||||   ||||||||    
T  33281666 tcaggagacaaatcatcactttgtccactcaaactagcatcgatctcattgttatctggaacagcttcaacattgtcatctacttgaaacagaaaggaaa 33281765  T
Q  326 tattatt 332  Q
    |||||||    
T  33281766 tattatt 33281772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 33260964 - 33261014
Alignment:
Q  309 ttgaaatgcaaaggaaatattattcggtaagttaatcggaaaaaccatgta 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33260964 ttgaaatgcaaaggaaatattattcggtaagttaatcggaaaaaccatgta 33261014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 33397402 - 33397512
Alignment:
Q  225 ctcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaaggaa 324  Q
    ||||| |||||||||| | ||||||||| ||||||||||| | ||||||||||| ||| ||||| || || |||||||| ||| |||||| | |||||||    
T  33397402 ctcaggagacaaatcatcactttgtccactcaaactagcatcaatctcattgttatctagaacatcttcaacattgtcatctacttgaaacggaaaggaa 33397501  T
Q  325 atattattcgg 335  Q
    |||||||||||    
T  33397502 atattattcgg 33397512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 335
Target Start/End: Original strand, 33408324 - 33408423
Alignment:
Q  236 aatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaaggaaatattattcgg 335  Q
    ||||||| |||||||| | |||||||||| | ||||||||||| ||| ||||| || || |||||||| ||| |||||| | ||||||||||||||||||    
T  33408324 aatcaccactttgtccggccaaactagcatcaatctcattgttatctagaacatcttcaacattgtcatctacttgaaacggaaaggaaatattattcgg 33408423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 2732970 - 2733032
Alignment:
Q  66 tatttggttcaaaatgttgtgaaatagcctctatagtggcgctataaaactattgtgtagcgg 128  Q
    ||||| || ||||||||||| |||||||  |||||| |||||||||| |||||||| ||||||    
T  2732970 tatttagtacaaaatgttgtcaaatagcagctatagaggcgctataatactattgtatagcgg 2733032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 26 - 334
Target Start/End: Complemental strand, 11561 - 11248
Alignment:
Q  26 gagtggaatttgaacaaattgctattgttcaaaattacgatatttggttcaaaatgttgtgaaatagcctctatagtggcgctataaaactattgtgtag 125  Q
    ||||||| | |||||||||||||||| |||| |||||||||| || || ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11561 gagtggactatgaacaaattgctattattcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatagtggcgctataaaactattgtgtag 11462  T
Q  126 cggtaccaaattgttactttcggcgatacaagattgacaacactaattcagtcaagcaagcatgatttaaaaatgaattgag-----cctttattcaaga 220  Q
    |||||  |||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||| ||||| |||||||||| ||     |||||||||||||    
T  11461 cggtaagaaattgttactttcagcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgaattaagcataacctttattcaaga 11362  T
Q  221 ttttctcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaa 320  Q
    || ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  11361 ttctctcagaagacaaatcaccactttgtcctgtcaaactagcaccgatctcattgttctctggaacagctctatcattgtcacctatttgaaatgcaaa 11262  T
Q  321 ggaaatattattcg 334  Q
    ||||||||||||||    
T  11261 ggaaatattattcg 11248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 26 - 358
Target Start/End: Original strand, 4451 - 4784
Alignment:
Q  26 gagtggaatttgaacaaattgctattgttcaaaattacgatatttggttcaaaatgttgtgaaatagcctctatagtggcgctataaaactattgtgtag 125  Q
    ||||||||| ||||||||||||||||| ||| |||||||||| || || ||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  4451 gagtggaatatgaacaaattgctattgctcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatagtggtgctataaaactattgtgtag 4550  T
Q  126 cggtaccaaattgttactttcggcgatacaagattgacaacactaattcagtcaagcaagcatgatttaaaaatgaattgag-----cctttattcaaga 220  Q
    |||||  ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||| |||||| ||| ||     ||| |||||||||    
T  4551 cggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgcattaagcataacctatattcaaga 4650  T
Q  221 ttttctcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaa 320  Q
    || ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||    ||| |||||||||||||||||||||||||    
T  4651 ttctctcagaagacaaatcaccactttgtcctgtcaaactagcaccgatctcattgttctctggaac----ccatcattgtcacctatttgaaatgcaaa 4746  T
Q  321 ggaaatattattcggtaagttaatcggaaaaaccatgt 358  Q
    |||||||||||||||||||||  ||||| |||||||||    
T  4747 ggaaatattattcggtaagtttttcggataaaccatgt 4784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 332
Target Start/End: Complemental strand, 12586 - 12480
Alignment:
Q  226 tcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaaggaaa 325  Q
    |||| |||||||||| | ||||||||| ||||||||||| ||||||||||||| |||||||||||| || |||||||| ||| ||||||   ||||||||    
T  12586 tcaggagacaaatcatcactttgtccactcaaactagcatcgatctcattgttatctggaacagcttcaacattgtcatctacttgaaacagaaaggaaa 12487  T
Q  326 tattatt 332  Q
    |||||||    
T  12486 tattatt 12480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 27 - 337
Target Start/End: Complemental strand, 17443035 - 17442721
Alignment:
Q  27 agtggaatttgaacaaattgctattgttcaaaattacgatatttggttcaaaatgttgtgaaatagcctctatagtggcgctataaaactattgtgtagc 126  Q
    |||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||| |     
T  17443035 agtggaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatagcatctatagtggcgctataaaactattgtgt-ga 17442937  T
Q  127 ggtaccaaattgttactttcggcgatacaagattgacaacactaattcagtcaagcaagcatgatttaaaaatgaattgagc----cttt-attcaagat 221  Q
     | | ||||  ||||||||| | |||||| ||||||||||||| |||||  |||| ||||| ||||  |||||||||| |||    |||| ||||||| |    
T  17442936 aggaacaaacagttactttcagggatacatgattgacaacactgattcaaacaagaaagcaggattggaaaatgaattaagcataactttaattcaagct 17442837  T
Q  222 tttctcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaag 321  Q
    | |||||| |||||||||| | ||||||||| ||||||||||| | |||| |||||||||| |||||||| || |||||||| ||| |||||||| ||||    
T  17442836 tctctcaggagacaaatcatcactttgtccactcaaactagcatcaatcttattgttctctagaacagcttcaacattgtcatctaattgaaatggaaag 17442737  T
Q  322 gaaatattattcggta 337  Q
    ||||||||||| ||||    
T  17442736 gaaatattatttggta 17442721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 26275600 - 26275540
Alignment:
Q  33 atttgaacaaattgctattgttcaaaattacgatatttggttcaaaatgttgtgaaatagc 93  Q
    |||||||||||| |||||||||| ||| |||| ||||| || |||||| ||||||||||||    
T  26275600 atttgaacaaatcgctattgttccaaaatacgctatttagtacaaaatattgtgaaatagc 26275540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 6894377 - 6894313
Alignment:
Q  27 agtggaatttgaacaaattgctattgttcaaaattacgatatttggttcaaaatgttgtgaaata 91  Q
    |||||||||||||||||||||||||||| || | |||  ||||  || ||||||||||| |||||    
T  6894377 agtggaatttgaacaaattgctattgtttaacaatacactattaagtacaaaatgttgtcaaata 6894313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 9130954 - 9130982
Alignment:
Q  27 agtggaatttgaacaaattgctattgttc 55  Q
    |||||||||||||||||||||||||||||    
T  9130954 agtggaatttgaacaaattgctattgttc 9130982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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