View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4647_low_18 (Length: 365)
Name: NF4647_low_18
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 14672526 - 14672173
Alignment:
| Q |
1 |
ctcttccctgaccaaatagtagtaactctaaatccatcaggcttttttgaacatttctcaaaatctatcgtttaaatggtgtacagagtcagtattggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
14672526 |
ctcttccctgaccaaatagtagtaactctaaatccatcaggcttttttgaacatttctcaaaatctatcgttgaaacggtgtccagagtcagtattggtg |
14672427 |
T |
|
| Q |
101 |
gtgcatctttgagtgacaaccttggaaggacttgggagaatgacggatattacttctaccaccccataaacagctccactagttctgatcttgttgtttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14672426 |
gtgcatctttgagtgacaaccttggaaggacttgggagaatgacggatattacttctaccaccccataaacagctccactagttctgatcttgttgtttc |
14672327 |
T |
|
| Q |
201 |
tactaaccctgctacaataaagtactctattgttgctccaccattggtttatgctacagccagaaccttcaaagttgcatcacagtcacagcgatccgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14672326 |
tactaaccctgctacaataaagtactctatttttggtccaccattggtttatgctacagccagaaccttcaaaattgcatcacagtcacagcgatccgat |
14672227 |
T |
|
| Q |
301 |
ttaagttggcacttcattgtagatccgaacttcatgtattttgttcgggttcat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14672226 |
ttaagttggcacttcattgtagatccgaacttcatgtattttgttcgggttcat |
14672173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 14677904 - 14677551
Alignment:
| Q |
1 |
ctcttccctgaccaaatagtagtaactctaaatccatcaggcttttttgaacatttctcaaaatctatcgtttaaatggtgtacagagtcagtattggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
14677904 |
ctcttccctgaccaaatagtagtaactctaaatccatcaggcttttttgaacatttctcaaaatctatcgttgaaacggtgtccagagtcagtattggtg |
14677805 |
T |
|
| Q |
101 |
gtgcatctttgagtgacaaccttggaaggacttgggagaatgacggatattacttctaccaccccataaacagctccactagttctgatcttgttgtttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14677804 |
gtgcatctttgagtgacaaccttggaaggacttgggagaatgacggatattacttctaccaccccataaacagctccactagttctgatcttgttgtttc |
14677705 |
T |
|
| Q |
201 |
tactaaccctgctacaataaagtactctattgttgctccaccattggtttatgctacagccagaaccttcaaagttgcatcacagtcacagcgatccgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14677704 |
tactaaccctgctacaataaagtactctatttttggtccaccattggtttatgctacagccagaaccttcaaaattgcatcacagtcacagcgatccgat |
14677605 |
T |
|
| Q |
301 |
ttaagttggcacttcattgtagatccgaacttcatgtattttgttcgggttcat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14677604 |
ttaagttggcacttcattgtagatccgaacttcatgtattttgttcgggttcat |
14677551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University