View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_low_19 (Length: 349)
Name: NF4647_low_19
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 14672637 - 14672961
Alignment:
| Q |
13 |
tcatcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcggttactgttattgtggcgaaggtcgtgttagggtt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14672637 |
tcatcaaatgagagctattatagttcgtgaaattgaaattattgagaagcacgatactatcagcggttactgttattgtggcaaaggtcgtgttagggtt |
14672736 |
T |
|
| Q |
113 |
ggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtatatgatgccgtttcaaagaagagtcgagctgag |
212 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14672737 |
ggaatcaggaagagggtgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtatatgatgacgtttcaaagaagagtcgagctgag |
14672836 |
T |
|
| Q |
213 |
ttatagagtggtgaaagggtattgttgagtttcgaggtaacagacaaagatttgttggctattatttgaagatttgaatgttcgaattcaatatcaggtg |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14672837 |
ttatagagtggtgaaagggtattgttgagtttcgaggtaacagacaaagatttgttggctattatttgaagatttgaatgttcgaattcaatatcaggtg |
14672936 |
T |
|
| Q |
313 |
tgaaagttcgaccatgaaatgtgat |
337 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
14672937 |
tgaaagttcgaccatgaaatgtgat |
14672961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 14678015 - 14678339
Alignment:
| Q |
13 |
tcatcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcggttactgttattgtggcgaaggtcgtgttagggtt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14678015 |
tcatcaaatgagagctattatagttcgtgaaattgaaattattgagaagcacgatactatcagcggttactgttattgtggcaaaggtcgtgttagggtt |
14678114 |
T |
|
| Q |
113 |
ggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtatatgatgccgtttcaaagaagagtcgagctgag |
212 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
14678115 |
ggaatcaggaagagggtgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtatatgatgacgtttcaaagaagagtcgagctgag |
14678214 |
T |
|
| Q |
213 |
ttatagagtggtgaaagggtattgttgagtttcgaggtaacagacaaagatttgttggctattatttgaagatttgaatgttcgaattcaatatcaggtg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14678215 |
ttatagagtggtgaaagggtattgttgagtttcgaggtaacagacaaagatttgttggctattatttgaagatttgaatgttcgaattcaatatcaggtg |
14678314 |
T |
|
| Q |
313 |
tgaaagttcgaccatgaaatgtgat |
337 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
14678315 |
tgaaagttcgaccatgaaatgtgat |
14678339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 14666309 - 14666109
Alignment:
| Q |
14 |
catcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcg----gttactgttattgtggcgaaggtcgtgttagg |
109 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||| |||||||||||| || | |||||||||| ||||||||||||| || | |||| |||| || |
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|
| T |
14666309 |
catcaaaagagagctaatatagttcatgaaagtgatgttattgagaagtacgaaactatcagcgattacttactgttattgtagcaatggtcatgttggg |
14666210 |
T |
|
| Q |
110 |
gttggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtat---atgatgccgtttcaaagaagagtcga |
206 |
Q |
| |
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| ||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
14666209 |
ggtggaaccgggaaaaagatgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtatacgatgatgccgtttcaaagaagagtcga |
14666110 |
T |
|
| Q |
207 |
g |
207 |
Q |
| |
|
| |
|
|
| T |
14666109 |
g |
14666109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 14687350 - 14687557
Alignment:
| Q |
13 |
tcatcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcg----gttactgttattgtggcgaaggtcgtgttag |
108 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| ||||||||||||||| | |||||||||| |||||| ||||||||| | |||| |||| | |
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| T |
14687350 |
tcatcaaatgagagctgatatagttcatgaaagtgatgttattgagaagcacgaaactatcagcgatatattactgctattgtggcaatggtcatgttgg |
14687449 |
T |
|
| Q |
109 |
ggttggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtat---atgatgccgtttcaaagaagagtcg |
205 |
Q |
| |
|
|| |||||||| ||||| | |||||||||||||| ||||||| |||| ||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
14687450 |
ggctggaatcaagaaaaagttgaaaatagagacgaatccaatatctctcttgttgttgaattaagaatgtatatgatgatgccgtttcaaagaagagtca |
14687549 |
T |
|
| Q |
206 |
agctgagt |
213 |
Q |
| |
|
|| ||||| |
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|
| T |
14687550 |
agatgagt |
14687557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 14687572 - 14687640
Alignment:
| Q |
269 |
ggctattatttgaagatttgaatgttcgaattcaatatcaggtgtgaaagttcgaccatgaaatgtgat |
337 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| |||||| ||||||||||||| ||||||||||| |
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|
| T |
14687572 |
ggctattatttgaaggttggaatgttcgaattcaatgtcaggtatgaaagttcgaccctgaaatgtgat |
14687640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 14666095 - 14666039
Alignment:
| Q |
269 |
ggctattatttgaagatttgaatgttcgaattcaatatcaggtgtgaaagttcgacc |
325 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| |||||| ||||||||||||| |
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|
| T |
14666095 |
ggctattatttgaaggttggaatgttctaattcaatgtcaggtatgaaagttcgacc |
14666039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 13 - 336
Target Start/End: Complemental strand, 24057487 - 24057164
Alignment:
| Q |
13 |
tcatcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcggttactgttattgtggcgaaggtcgtgttagggtt |
112 |
Q |
| |
|
||||||| |||||| || ||||||| ||||||||||||| ||||||||| || |||| | |||| |||||| ||| |||||| |||| |||| |
|
|
| T |
24057487 |
tcatcaagtgagagttactatagtttacaaaagtgaagttatcaagaagcacataaccatcaatgattaccgttattaaggcaaaggtcatgttgtggtt |
24057388 |
T |
|
| Q |
113 |
ggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtatatgatgccgtttcaaagaagagtcgagctgag |
212 |
Q |
| |
|
|||||| || ||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||| |||||| |||||||||||| |||||||||| |
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|
| T |
24057387 |
ggaatcgggtaaagggtgaaaatggagacggatccagtgtctcccatgttgttgaattttgaatgtataggatgccttttcaaagaagattcgagctgag |
24057288 |
T |
|
| Q |
213 |
ttatagagtggtgaaagggtattgttgagtttcgaggtaacagacaaagatttgttggctattatttgaagatttgaatgttcgaattcaatatcaggtg |
312 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| || | |||| ||||||||| | ||| ||||||||| || |||||||| |||||| | |||||| |
|
|
| T |
24057287 |
ttataaagtggtgaaagggtattgttcagtttagatgaaacaaccaaagatttttctgcttttatttgaaagttggaatgttcaaattcagtgtcaggta |
24057188 |
T |
|
| Q |
313 |
tgaaagttcgaccatgaaatgtga |
336 |
Q |
| |
|
|||||||||||| ||||| |||| |
|
|
| T |
24057187 |
cgaaagttcgaccctgaaacgtga |
24057164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 30734850 - 30735051
Alignment:
| Q |
13 |
tcatcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcg----gttactgttattgtggcgaaggtcgtgttag |
108 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||| ||||||||||||||| | |||||||||| ||||||||||||| || | |||| |||| | |
|
|
| T |
30734850 |
tcatcaaaagagagctaatatagttcatgaaagtgatgttattgagaagcacgaaactatcagcgattacttactgttattgtagcaatggtcatgttgg |
30734949 |
T |
|
| Q |
109 |
ggttggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtat---atgatgccgtttcaaagaagagtcg |
205 |
Q |
| |
|
|||||||| | |||||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |
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|
| T |
30734950 |
ggttggaaccgggaaaaagctgaaattagagacggatccaatgtctcccttgttgttgaattttgaatgtatacgatgatgcagtttcaaagaagagtcg |
30735049 |
T |
|
| Q |
206 |
ag |
207 |
Q |
| |
|
|| |
|
|
| T |
30735050 |
ag |
30735051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 30735065 - 30735121
Alignment:
| Q |
269 |
ggctattatttgaagatttgaatgttcgaattcaatatcaggtgtgaaagttcgacc |
325 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
30735065 |
ggctattatttgaaggttggaatgttctaattcaatgtcaggtatgaaagttcgacc |
30735121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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