View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_low_20 (Length: 346)
Name: NF4647_low_20
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 43428781 - 43429106
Alignment:
| Q |
1 |
tggtggatgggggaaaagatagaatgagtagaaagagagaatccaaatctcccacgaccagtttggattctggtgactagagaaacaacaagagtaannn |
100 |
Q |
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| T |
43428781 |
tggtgaatgggggaaaagatagaatgagtagaaagagagaatccaaatctcccacgaccagtttggattc-ggtgactcga--aacaacaagagtaattt |
43428877 |
T |
|
| Q |
101 |
nnnnnn--ccgcttatctccaaattctgatatcgagtgagttggttccttcttcttccatgcattgannnnnnn-ctattcacagttaccgtgtgtttgt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
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| T |
43428878 |
ttttttttccgcttatctccaaattctgatatcgagtgagttggttccttcttcttccatgcattgattttttttctattcatagttaacgtgtgtttgt |
43428977 |
T |
|
| Q |
198 |
gtatgtatgcatgtatgtatgagctattcattttatttcgtaaccttgtacatgtttgatcaaaacgcctcgttcgttgattgtgttgttgttagagact |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
43428978 |
gtatgtatgcatgtatgtatgagctattcattttatttcgtaaccttgtacatgtttgatcaaaatgcctcgttcattgattgtgttgttgttagagact |
43429077 |
T |
|
| Q |
298 |
tgcggcaaaataagacggttcctctgtgt |
326 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
43429078 |
tgcggcaaaataagacggttcctctgtgt |
43429106 |
T |
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