View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4647_low_28 (Length: 250)

Name: NF4647_low_28
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4647_low_28
NF4647_low_28
[»] chr5 (32 HSPs)
chr5 (1-235)||(9251606-9251840)
chr5 (1-126)||(42852027-42852150)
chr5 (1-134)||(28625485-28625617)
chr5 (1-129)||(13060556-13060683)
chr5 (1-129)||(12986965-12987095)
chr5 (30-160)||(41419536-41419665)
chr5 (1-134)||(41059738-41059870)
chr5 (1-134)||(12467269-12467405)
chr5 (1-134)||(24030220-24030351)
chr5 (70-134)||(2878626-2878687)
chr5 (1-134)||(17657247-17657379)
chr5 (67-152)||(28357214-28357297)
chr5 (58-128)||(38498632-38498699)
chr5 (112-158)||(6144719-6144766)
chr5 (67-147)||(43268571-43268649)
chr5 (100-134)||(15167663-15167697)
chr5 (100-134)||(15364104-15364138)
chr5 (100-134)||(29136775-29136809)
chr5 (100-134)||(35083342-35083376)
chr5 (31-134)||(35536881-35536981)
chr5 (67-134)||(1943068-1943132)
chr5 (101-134)||(3977577-3977610)
chr5 (67-134)||(5559868-5559932)
chr5 (100-133)||(7364117-7364150)
chr5 (100-129)||(11163236-11163265)
chr5 (8-129)||(11912056-11912176)
chr5 (44-134)||(40152825-40152913)
chr5 (100-129)||(40697109-40697138)
chr5 (113-160)||(28625459-28625507)
chr5 (30-134)||(40452426-40452529)
chr5 (1-87)||(41534628-41534716)
chr5 (56-126)||(43319065-43319132)
[»] chr4 (32 HSPs)
chr4 (1-129)||(18424232-18424358)
chr4 (1-134)||(42611818-42611949)
chr4 (1-134)||(28074370-28074501)
chr4 (100-158)||(34633493-34633552)
chr4 (67-158)||(40699433-40699522)
chr4 (1-134)||(896975-897107)
chr4 (67-134)||(18630844-18630908)
chr4 (30-129)||(17222864-17222961)
chr4 (100-134)||(38345771-38345805)
chr4 (1-134)||(7148777-7148909)
chr4 (1-134)||(29877644-29877776)
chr4 (67-134)||(42617179-42617243)
chr4 (1-134)||(48591373-48591505)
chr4 (105-160)||(9319156-9319212)
chr4 (67-129)||(48721893-48721952)
chr4 (68-160)||(825756-825846)
chr4 (6-100)||(18258021-18258115)
chr4 (56-129)||(36298394-36298464)
chr4 (56-134)||(43415237-43415313)
chr4 (100-134)||(488333-488367)
chr4 (100-134)||(4331433-4331467)
chr4 (100-134)||(11256610-11256644)
chr4 (100-134)||(34526286-34526320)
chr4 (100-134)||(48667773-48667807)
chr4 (1-101)||(52274099-52274201)
chr4 (67-134)||(8601274-8601338)
chr4 (105-153)||(10046340-10046389)
chr4 (56-100)||(7206566-7206610)
chr4 (110-161)||(28663406-28663458)
chr4 (30-127)||(36254992-36255087)
chr4 (102-134)||(42153111-42153143)
chr4 (67-134)||(52700492-52700557)
[»] chr1 (19 HSPs)
chr1 (1-134)||(48819304-48819436)
chr1 (6-134)||(4068125-4068252)
chr1 (1-134)||(37712073-37712204)
chr1 (1-128)||(3069809-3069935)
chr1 (8-131)||(15515299-15515421)
chr1 (56-134)||(9572733-9572808)
chr1 (6-134)||(26988158-26988285)
chr1 (7-134)||(6337705-6337831)
chr1 (1-134)||(37329361-37329493)
chr1 (6-134)||(13038957-13039084)
chr1 (100-158)||(38781181-38781239)
chr1 (112-156)||(31378809-31378854)
chr1 (6-134)||(16888915-16889041)
chr1 (7-129)||(1565328-1565457)
chr1 (67-134)||(42591455-42591519)
chr1 (67-134)||(47413445-47413509)
chr1 (110-153)||(6337812-6337856)
chr1 (67-134)||(41576344-41576408)
chr1 (56-134)||(46473156-46473231)
[»] chr7 (20 HSPs)
chr7 (6-134)||(30181560-30181687)
chr7 (15-129)||(14691253-14691366)
chr7 (1-134)||(29390500-29390631)
chr7 (67-129)||(33288029-33288088)
chr7 (1-134)||(34922936-34923070)
chr7 (1-134)||(29378650-29378782)
chr7 (67-134)||(46744026-46744090)
chr7 (56-134)||(48949782-48949863)
chr7 (100-134)||(26331868-26331902)
chr7 (100-134)||(33204937-33204971)
chr7 (100-134)||(35809193-35809227)
chr7 (100-129)||(1401176-1401205)
chr7 (101-134)||(23356440-23356473)
chr7 (56-134)||(16932879-16932954)
chr7 (56-134)||(16938262-16938337)
chr7 (67-134)||(19914018-19914082)
chr7 (56-134)||(22032824-22032899)
chr7 (110-157)||(33288155-33288203)
chr7 (101-129)||(39279534-39279562)
chr7 (56-134)||(47654363-47654438)
[»] chr2 (17 HSPs)
chr2 (1-134)||(4026931-4027062)
chr2 (1-134)||(21788462-21788594)
chr2 (71-134)||(8832534-8832594)
chr2 (30-134)||(36501464-36501566)
chr2 (6-160)||(9140652-9140805)
chr2 (67-134)||(38216092-38216156)
chr2 (114-161)||(17317157-17317205)
chr2 (99-134)||(37420008-37420043)
chr2 (30-134)||(42064886-42064988)
chr2 (30-134)||(7480848-7480949)
chr2 (1-134)||(25836662-25836793)
chr2 (56-134)||(17546486-17546561)
chr2 (56-134)||(27880946-27881021)
chr2 (67-129)||(29774818-29774877)
chr2 (60-134)||(30382218-30382289)
chr2 (6-134)||(33321261-33321388)
chr2 (9-126)||(42839278-42839393)
[»] chr8 (20 HSPs)
chr8 (7-134)||(34286513-34286638)
chr8 (67-134)||(25333650-25333714)
chr8 (15-160)||(35168360-35168508)
chr8 (1-134)||(32975692-32975824)
chr8 (36-134)||(25465796-25465891)
chr8 (82-134)||(25671839-25671888)
chr8 (100-133)||(8752909-8752942)
chr8 (67-134)||(24350468-24350532)
chr8 (110-158)||(34286619-34286668)
chr8 (36-100)||(25333712-25333776)
chr8 (1-134)||(28879063-28879192)
chr8 (110-153)||(32213078-32213122)
chr8 (56-134)||(35055484-35055558)
chr8 (56-129)||(32924167-32924236)
chr8 (100-134)||(2669751-2669785)
chr8 (100-129)||(2019594-2019623)
chr8 (100-160)||(9130939-9131000)
chr8 (1-134)||(32131445-32131577)
chr8 (67-134)||(38338800-38338864)
chr8 (67-134)||(42363266-42363330)
[»] chr3 (18 HSPs)
chr3 (1-134)||(40240526-40240658)
chr3 (1-134)||(40581025-40581158)
chr3 (56-129)||(48597820-48597891)
chr3 (6-134)||(3845865-3845991)
chr3 (1-129)||(43079888-43080015)
chr3 (8-125)||(53217998-53218114)
chr3 (1-101)||(52021251-52021354)
chr3 (100-134)||(4974414-4974448)
chr3 (6-160)||(10667408-10667562)
chr3 (56-132)||(29830590-29830663)
chr3 (100-134)||(38524191-38524225)
chr3 (100-134)||(46573403-46573437)
chr3 (67-134)||(10449050-10449114)
chr3 (6-158)||(10521164-10521316)
chr3 (67-134)||(17752080-17752144)
chr3 (67-134)||(19053400-19053464)
chr3 (67-134)||(25341343-25341407)
chr3 (100-129)||(52895359-52895388)
[»] chr6 (10 HSPs)
chr6 (67-150)||(10874057-10874138)
chr6 (80-134)||(12816850-12816902)
chr6 (101-134)||(2255838-2255871)
chr6 (100-134)||(3210938-3210972)
chr6 (100-134)||(9201670-9201704)
chr6 (100-134)||(9202348-9202382)
chr6 (100-134)||(10755232-10755266)
chr6 (100-134)||(35071377-35071411)
chr6 (56-134)||(29623427-29623501)
chr6 (56-134)||(32165210-32165285)
[»] scaffold0057 (1 HSPs)
scaffold0057 (30-134)||(24338-24440)
[»] scaffold0015 (1 HSPs)
scaffold0015 (100-134)||(48577-48611)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 9251840 - 9251606
Alignment:
Q  1 ttattcaaataaagaagctttaatgtattttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaacttat 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  9251840 ttattcaaataaagaagctttaatatattttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttactgagaacttat 9251741  T
Q  101 tatgaattaacataaaagcttatttatttacatagcttaaaaataagtcaatcaaaacggatccataacccttttaacttacataacatccattccaata 200  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  9251740 tatgaattaacataaaagcttatttatttacatagtttgaaaataagttaatcaaaacggatccaaaacccttttgacttatataacatccattccaata 9251641  T
Q  201 agtcaatccttatttatagcataatattacttggc 235  Q
    |||||||||||||||||||||||||||||||||||    
T  9251640 agtcaatccttatttatagcataatattacttggc 9251606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 42852027 - 42852150
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    ||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||| | |||||||||  ||| || ||| | ||||||||||||| |||||    
T  42852027 ttattcaaataaataagcttttatgtattattcataagcttgtcaagatagtttatgaaaaaacaacttataaa-atacaattttcgttagtgagaactt 42852125  T
Q  99 attatgaattaacataaaagcttattta 126  Q
    ||   |||||||||||||||||||||||    
T  42852126 at---gaattaacataaaagcttattta 42852150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 28625485 - 28625617
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| ||||||| | ||||| ||||||||||| ||||| |||||| | ||||||||   |||||||||| | ||||||||||||| ||| |    
T  28625485 ttatgcaaataaataagcttttaagtattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgttagtgagaacct 28625584  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    ||   |||||||||||||||||||||||||| ||||    
T  28625585 at---gaattaacataaaagcttatttatttgcata 28625617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 13060683 - 13060556
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | ||||||||   ||||||| ||   ||||||||||||| |||||    
T  13060683 ttatgcaaataaataagcttttatgtattgttcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagttaccattttcgttagtgagaactt 13060584  T
Q  99 attatgaattaacataaaagcttatttattt 129  Q
    ||   ||||||||||||||||||||||||||    
T  13060583 at---gaattaacataaaagcttatttattt 13060556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 12987095 - 12986965
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | |||||||| | ||||||| ||   |||| |||||||| |||||    
T  12987095 ttatgcaaataaataagcttttatgtattgttcataagcttgtcaaggtagtttatgaaaaaacagtttatgaagttaccatttttgttagtgagaactt 12986996  T
Q  99 attatgaattaacataaaagcttatttattt 129  Q
    || |   ||||||||||||||||||||||||    
T  12986995 atgaattattaacataaaagcttatttattt 12986965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 41419536 - 41419665
Alignment:
Q  30 ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatt 128  Q
    ||||||||||| ||||| |||||| | ||||||||   |||||||||| | ||||||||||||| ||||||| |   |||||||||||| ||||||||||    
T  41419536 ttcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgttagtgagaacttatca---attaacataaaaacttatttatt 41419632  T
Q  129 tacat-agcttaaaaataagtcaatcaaaacgg 160  Q
    | ||| |||| |||| |||||||||| ||||||    
T  41419633 ttcataagctcaaaagtaagtcaatccaaacgg 41419665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 41059870 - 41059738
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaa-caatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||| ||| ||||||| ||||||| ||||||||||||||||| | |||| | ||||| ||   |||||||||  | ||||||||||||| |||||    
T  41059870 ttatgcaaacaaataagcttttatgtattattcataagcttatcaaggttgtttatgaaaaatcaccttatgaagattcaattttcgttagtgagaactt 41059771  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    ||   |||||||||||||||||||||||||| ||||    
T  41059770 at---gaattaacataaaagcttatttatttgcata 41059738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 12467269 - 12467405
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct--aaaaaacaatgtatgaagatatagttttcgttagtgaaaact 97  Q
    |||| |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| |  ||||||||   |||||||| | | |||| |||||||| ||||    
T  12467269 ttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaaaacagcttatgaagagacaatttttgttagtgagaact 12467368  T
Q  98 tattatgaattaacataaaagcttatttatttacata 134  Q
    ||| |   | |||||||||||||||||||||| ||||    
T  12467369 tatgaattactaacataaaagcttatttatttgcata 12467405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 24030220 - 24030351
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| ||||||| ||||||| ||||||||||| ||||  |||||| | |||||||| | |  || |||| | ||||||||||||| |||||    
T  24030220 ttatccaaataaataagcttttatgtattattcataagcttgtcaaagtagtttatgaaaaaacact-tgcgaggatacaattttcgttagtgagaactt 24030318  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    ||   |||||||||||||||||||||||||| ||||    
T  24030319 at---gaattaacataaaagcttatttatttgcata 24030351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 2878687 - 2878626
Alignment:
Q  70 gaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    ||||||| | |||| |||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  2878687 gaagatacaatttttgttagtgaaaactt-tta--aattaacataaaagcttatttatttacata 2878626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 17657247 - 17657379
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| ||||||| ||||||| |||||||||||  ||   |||||| | ||||||||   ||||||||||   ||||||||||||| |||||    
T  17657247 ttatgcaaataaataagcttttatgtattattcataagcttgccattgtagtttatgaaaaaacatcttatgaagatacgattttcgttagtgagaactt 17657346  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    ||   ||||||||||||||| |||||||||| ||||    
T  17657347 at---gaattaacataaaaggttatttatttgcata 17657379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 28357214 - 28357297
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacat-agcttaaaaataagtcaat 152  Q
    |||||||||| | |||||||||  |||||||||| |   |||||||||||||||||||||||| ||| |||| ||||||||| ||||    
T  28357214 tatgaagatacaattttcgttaacgaaaacttataa---attaacataaaagcttatttatttgcataagctaaaaaataagccaat 28357297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 38498632 - 38498699
Alignment:
Q  58 aaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatt 128  Q
    |||||||| ||| |||||||| |||| ||||||||||||   |||| |||||| |||||||||||||||||    
T  38498632 aaaacaatttataaagatataatttttgttagtgaaaac---ttataaattaaaataaaagcttatttatt 38498699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 6144766 - 6144719
Alignment:
Q  112 ataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaac 158  Q
    |||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  6144766 ataaaagcttatttatttacatgagctcaaaaataagtcaatctaaac 6144719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 43268649 - 43268571
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacat-agcttaaaaataag 147  Q
    |||||||||| | |||| |||||||| ||||||| |   |||||||||||||||||||||||| ||| |||| |||||||||    
T  43268649 tatgaagatacaatttttgttagtgagaacttataa---attaacataaaagcttatttattttcataagctcaaaaataag 43268571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 15167697 - 15167663
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    ||||||||||||||||||||| |||||||||||||    
T  15167697 ttatgaattaacataaaagctaatttatttacata 15167663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 15364104 - 15364138
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  15364104 ttatgaattaacataaaagcttatttatttgcata 15364138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 29136809 - 29136775
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  29136809 ttatgaattaacataaaagcttatttatttgcata 29136775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 35083342 - 35083376
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  35083342 ttatgaattaacataaaagcttatttatttgcata 35083376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 35536881 - 35536981
Alignment:
Q  31 tcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 129  Q
    |||||||||| |||||||||||| | ||||||||   |||||||||| | ||||||||| ||| |||   ||||||| ||| ||||||||||||||||||    
T  35536881 tcataagcttgtcaagatagtttatgaaaaaacagcttatgaagatacaattttcgttactgagaac---ttatgaa-taatataaaagcttatttattt 35536976  T
Q  130 acata 134  Q
     ||||    
T  35536977 gcata 35536981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 1943068 - 1943132
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| | ||||| ||||||| |||||||   |||||| ||||||||||||||||||| ||||    
T  1943068 tatgaagatacaattttcattagtgagaacttat---gaattagcataaaagcttatttatttgcata 1943132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 3977577 - 3977610
Alignment:
Q  101 tatgaattaacataaaagcttatttatttacata 134  Q
    ||||||||||||||||||||||||||||| ||||    
T  3977577 tatgaattaacataaaagcttatttatttgcata 3977610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 5559932 - 5559868
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| | ||||||||||||| || ||||   ||||| |||||||||||||||||||| ||||    
T  5559932 tatgaagatacaattttcgttagtgagaatttat---gaatttacataaaagcttatttatttgcata 5559868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 7364150 - 7364117
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacat 133  Q
    ||||||||||||||||||||||| ||||||||||    
T  7364150 ttatgaattaacataaaagcttaattatttacat 7364117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 11163265 - 11163236
Alignment:
Q  100 ttatgaattaacataaaagcttatttattt 129  Q
    ||||||||||||||||||||||||||||||    
T  11163265 ttatgaattaacataaaagcttatttattt 11163236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 11912176 - 11912056
Alignment:
Q  8 aataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatga 105  Q
    |||||| ||||||| ||||||| ||||||| ||| ||||  |||||| | |||||| |   |||||||||| | |||| |||||||| |||||||   ||    
T  11912176 aataaataagcttttatgtattgttcataatcttgtcaaagtagtttgtgaaaaaagagcttatgaagatacaatttttgttagtgagaacttat---ga 11912080  T
Q  106 attaacataaaagcttatttattt 129  Q
    |||||||| |||||||||||||||    
T  11912079 attaacatgaaagcttatttattt 11912056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 40152913 - 40152825
Alignment:
Q  44 aagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| | |||||||||| |||||||||| | ||||||||  ||| |||||||   ||||||| ||||||| |||||||||| ||||    
T  40152913 aagatagtttatgaaaaaacaatttatgaagataaaattttcgttcttgagaacttat---gaattaatataaaagattatttatttgcata 40152825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 40697109 - 40697138
Alignment:
Q  100 ttatgaattaacataaaagcttatttattt 129  Q
    ||||||||||||||||||||||||||||||    
T  40697109 ttatgaattaacataaaagcttatttattt 40697138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 28625507 - 28625459
Alignment:
Q  113 taaaagcttatttatttacata-gcttaaaaataagtcaatcaaaacgg 160  Q
    ||||||||||||||||| |||| ||| ||||||||||||||| ||||||    
T  28625507 taaaagcttatttatttgcataagctaaaaaataagtcaatccaaacgg 28625459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 40452529 - 40452426
Alignment:
Q  30 ttcataagcttatcaagatagtttctaaa-aaacaatgtatgaagatatagtttt-cgttagtgaaaacttattatgaattaacataaaagcttatttat 127  Q
    ||||||||||| ||||| |||||| | || |||||   |||||||||||| |||| ||||||||| |||||||   |||| ||||||| |||||||||||    
T  40452529 ttcataagcttgtcaaggtagtttatgaagaaacagcttatgaagatataatttttcgttagtgagaacttat---gaataaacataatagcttatttat 40452433  T
Q  128 ttacata 134  Q
    || ||||    
T  40452432 ttgcata 40452426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 41534628 - 41534716
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagttt-ctaaaaaacaatgtatgaagatatagttttcgtt 87  Q
    |||| |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | ||||||||   |||||||||| | ||||||||    
T  41534628 ttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttacgaaaaaacagcttatgaagatacaattttcgtt 41534716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 43319065 - 43319132
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttattta 126  Q
    |||||||| | ||||||| |||| ||||||||||||| |||   ||||||||||| |||||| ||||||||    
T  43319065 aaaaaacagtttatgaaggtataattttcgttagtgagaac---ttatgaattaagataaaaacttattta 43319132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 18424358 - 18424232
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaactta 99  Q
    |||| |||||||| ||||||| ||||||| ||||||| ||| | ||| |||||| | ||||||||| |||||||||| | |||| |||| ||||||||||    
T  18424358 ttatacaaataaataagcttttatgtattattcataaacttgtgaaggtagtttatgaaaaacaatttatgaagatacaatttttgttattgaaaactta 18424259  T
Q  100 ttatgaattaacataaaagcttatttattt 129  Q
    |   ||||||||||||||||||||||||||    
T  18424258 t---gaattaacataaaagcttatttattt 18424232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 42611949 - 42611818
Alignment:
Q  1 ttattcaaataaagaagcttta-atgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaact 97  Q
    |||| |||||||| |||||||| ||||||| ||||||||||| || || |||||| | |||||||||  |||||||||| ||||||||| ||||| ||||    
T  42611949 ttatgcaaataaataagctttatatgtattattcataagcttgtcgag-tagtttatgaaaaaacaacttatgaagatacagttttcgt-agtgacaact 42611852  T
Q  98 tattatgaattaacataaaagcttatttatttacata 134  Q
    |||   |||||||||||||||||||||||||| ||||    
T  42611851 tat---gaattaacataaaagcttatttatttgcata 42611818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 28074370 - 28074501
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaactta 99  Q
    |||| |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | ||||| |   |||||||||| | |||||||||| ||||||       
T  28074370 ttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaaaagcttatgaagatacaattttcgttagcgaaaac--- 28074466  T
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    || |||| |||||||||| ||||||||||| ||||    
T  28074467 ttgtgaaataacataaaatcttatttatttgcata 28074501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 34633493 - 34633552
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaac 158  Q
    |||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||    
T  34633493 ttatgaattaacataaaagcttatttatttgcgtaagcttaaaaataagtcaatccaaac 34633552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 40699433 - 40699522
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaac 158  Q
    |||||||||| ||||||||| ||||| |||||||   |||||||||||||| ||||||| ||| ||| |||| |||||||||| |||||||||    
T  40699433 tatgaagatacagttttcgtaagtgagaacttat---gaattaacataaaatcttatttgtttgcataagctcaaaaataagttaatcaaaac 40699522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 896975 - 897107
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| || |||| ||||||| ||||||||||| ||||  |||||| | |||||||||| || | |||||   |||||||||||||||||||    
T  896975 ttatgcaaataaataaacttttatgtattattcataagcttgtcaatgtagtttatgaaaaaacaatttacgtagatacgattttcgttagtgaaaactt 897074  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    || |   ||||| |||||||||||||||||| ||||    
T  897075 ataa---attaatataaaagcttatttatttgcata 897107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 18630908 - 18630844
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| ||||||||||||||| |||||||   ||||||| |||||||||||||||||| ||||    
T  18630908 tatgaagataaagttttcgttagtgagaacttat---gaattaatataaaagcttatttatttgcata 18630844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 17222864 - 17222961
Alignment:
Q  30 ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatt 128  Q
    ||||||||||| ||||| |||||| | ||||||||   |||||||||| | ||||||||||| | |||||||   |||||||||||||| ||||||||||    
T  17222864 ttcataagcttgtcaaggtagtttatgaaaaaacagattatgaagatacaattttcgttagttagaacttat---gaattaacataaaaacttatttatt 17222960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 38345805 - 38345771
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||||||||    
T  38345805 ttatgaattaacataaaagcttatttatttacata 38345771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 7148777 - 7148909
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | ||||||||   ||| || ||| | ||||| ||||| | |||      
T  7148777 ttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttttgaaaaaacagcttataaaaatacaattttctttagtcagaac-- 7148874  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
     |||||||||| ||||||||||||||||||| ||||    
T  7148875 -ttatgaattagcataaaagcttatttatttgcata 7148909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 29877644 - 29877776
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaa-caatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| ||||||| ||||||| |||||||||||   ||| |||||| | ||||| ||   |||||||||| | |||| |||||||| |||||    
T  29877644 ttatgcaaataaataagcttttatgtattattcataagcttgctaaggtagtttatgaaaaagcagcttatgaagatacaatttttgttagtgagaactt 29877743  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    ||   |||||||||||||||||||| ||||| ||||    
T  29877744 at---gaattaacataaaagcttatatatttgcata 29877776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 42617243 - 42617179
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||  |||||||||||||||||   |||| |||||| |||||| ||||||||||||||||    
T  42617243 tatgaagatatgattttcgttagtgaaaac---ttataaattaaaataaaaacttatttatttacata 42617179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 48591505 - 48591373
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| ||| ||| || |||| |||||| |||| ||||| |||||| | ||||||||   |||||||||| | ||||||||| ||| |||||    
T  48591505 ttatgcaaataaataagtttttatatattattcatacgcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgttaatgagaactt 48591406  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    ||   |||||||| ||||||||||||||||| ||||    
T  48591405 at---gaattaacgtaaaagcttatttatttgcata 48591373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 9319156 - 9319212
Alignment:
Q  105 aattaacataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaacgg 160  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||||    
T  9319156 aattaacataaaagcttatttatttacataagctaaaaaataagccaaaccaaacgg 9319212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 48721893 - 48721952
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 129  Q
    |||||||||||| |||| |||||||| |||||||   ||||||| ||||||||||||||||||    
T  48721893 tatgaagatataatttttgttagtgagaacttat---gaattaatataaaagcttatttattt 48721952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 825756 - 825846
Alignment:
Q  68 atgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaacgg 160  Q
    ||||||||| | |||| |||||||||| |||||   |||||||||||||| ||||||||||| ||| |||| |||||| || ||||| ||||||    
T  825756 atgaagatacattttttgttagtgaaagcttat---gaattaacataaaatcttatttatttgcataagctaaaaaattagccaatccaaacgg 825846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 18258021 - 18258115
Alignment:
Q  6 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaacttat 100  Q
    |||||||| ||| |||| |||||| ||||||| |||||||||||  ||| | ||||||||  ||||||| || | |||||||||||||||||||||    
T  18258021 caaataaataagtttta-tgtattattcataaacttatcaagatgttttttgaaaaacaacttatgaagttacaattttcgttagtgaaaacttat 18258115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 36298394 - 36298464
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 129  Q
    |||||||||| |||||||||| | |||| |||| |||||||   ||||||||||| ||||||| ||||||||||    
T  36298394 aaaaaacaatttatgaagataaattttttgttaatgaaaac---ttatgaattaatataaaagtttatttattt 36298464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 43415313 - 43415237
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| ||| |||||||| | || |||||||||||  |  |||||||||||||||||  |||||||||||||||    
T  43415313 aaaaaacaatttatcaagatataatatttgttagtgaaaaact--tatgaattaacataaaaatttatttatttacata 43415237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 488367 - 488333
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  488367 ttatgaattaacataaaagcttatttatttccata 488333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 4331433 - 4331467
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||| ||||||||||||||||    
T  4331433 ttatgaattaacataaaaacttatttatttacata 4331467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 11256644 - 11256610
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  11256644 ttatgaattaacataaaagcttatttatttgcata 11256610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 34526320 - 34526286
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  34526320 ttatgaattaacataaaagcttatttatttgcata 34526286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 48667773 - 48667807
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  48667773 ttatgaattaacataaaagcttatttatttgcata 48667807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 52274201 - 52274099
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagttt-ctaaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| || |||| ||||||| || |||||||||||||| |||||| | ||||||||   |||||||||| | ||||||| ||||| |||||    
T  52274201 ttatgcaaataaataaacttttatgtattattgataagcttatcaaggtagtttacgaaaaaacagcttatgaagatacaattttcgtcagtgagaactt 52274102  T
Q  99 att 101  Q
    |||    
T  52274101 att 52274099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 8601274 - 8601338
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| | |||| |||||||||||   ||||| ||||||||| ||||||||||||||| ||||    
T  8601274 tatgaagatacaatttttgttagtgaaaa---attataaattaacattaaagcttatttatttgcata 8601338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 10046340 - 10046389
Alignment:
Q  105 aattaacataaaagcttatttatttacat-agcttaaaaataagtcaatc 153  Q
    |||||||||||||||||| |||||||||| |||| |||||||||| ||||    
T  10046340 aattaacataaaagcttaattatttacataagctcaaaaataagttaatc 10046389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 7206610 - 7206566
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttat 100  Q
    |||||||||  |||||||||| ||||||||||||||| |||||||    
T  7206610 aaaaaacaacttatgaagataaagttttcgttagtgagaacttat 7206566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 28663458 - 28663406
Alignment:
Q  110 acataaaagcttatttatttacata-gcttaaaaataagtcaatcaaaacgga 161  Q
    ||||||||||| |||||||| |||| ||| ||||||||||||||| |||||||    
T  28663458 acataaaagctcatttatttgcataagctcaaaaataagtcaatccaaacgga 28663406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 36255087 - 36254992
Alignment:
Q  30 ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttat 127  Q
    ||||||||||| ||||  |||||| | ||||||||   |||||||||| | ||||  ||||||| |||||||   ||||||||||||||||||||||||    
T  36255087 ttcataagcttgtcaacgtagtttgtgaaaaaacagcttatgaagatacaattttaattagtgagaacttat---gaattaacataaaagcttatttat 36254992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 42153143 - 42153111
Alignment:
Q  102 atgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||| ||||    
T  42153143 atgaattaacataaaagcttatttatttgcata 42153111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 52700557 - 52700492
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    ||||||||||   ||||||||||| | ||||||| |  |||||||||||||| |||||||||||||||    
T  52700557 tatgaagatacgattttcgttagtaagaacttataa--aattaacataaaagattatttatttacata 52700492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 48819304 - 48819436
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| ||||||||  |||||||||||||| ||||||||||| ||||| |||||| | ||||||||   |||||||||| | |||| |||||||| |||||    
T  48819304 ttatgcaaataaatgagctttaatgtattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacattttttgttagtgagaactt 48819403  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    ||   |||||||||||||||||||||||||| ||||    
T  48819404 at---gaattaacataaaagcttatttatttgcata 48819436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 4068125 - 4068252
Alignment:
Q  6 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattat 103  Q
    |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | |||||||||  ||||||||||   ||||||||||||| |||||||       
T  4068125 caaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaaacaacttatgaagatactattttcgttagtgagaacttat--- 4068221  T
Q  104 gaattaacataaaagcttatttatttacata 134  Q
    ||||||| ||||||| |||||||||| ||||    
T  4068222 gaattaatataaaagtttatttatttgcata 4068252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 37712073 - 37712204
Alignment:
Q  1 ttattcaaataaagaagctttaatgtattttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactta 99  Q
    |||| ||||| || ||||||| |||||| ||||||||||| ||||| |||||| | |||||||||  |||||||||| |  |||||||||| | ||||||    
T  37712073 ttatgcaaatgaataagcttttatgtatattcataagcttgtcaaggtagtttatgaaaaaacaacttatgaagatacaactttcgttagtaagaactta 37712172  T
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |   ||||||||||||||| |||||||||| ||||    
T  37712173 t---gaattaacataaaagtttatttatttgcata 37712204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 3069935 - 3069809
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||  ||||||||||||||| ||||||||||| ||||| |||||| | ||||||||   |||||||||| | |||||  |||||| |||||    
T  3069935 ttatacaaataagtaagctttaatgtattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcactagtgagaactt 3069836  T
Q  99 attatgaattaacataaaagcttatttatt 128  Q
    ||   |||||||||||||||||||||||||    
T  3069835 at---gaattaacataaaagcttatttatt 3069809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 15515421 - 15515299
Alignment:
Q  8 aataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatga 105  Q
    |||||| ||||||| ||||||| ||||||||||| ||||| |||||| | |||||| |   |||||||||| | ||||||||||||| |||||||   ||    
T  15515421 aataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaaagagcttatgaagatacaattttcgttagtgagaacttat---ga 15515325  T
Q  106 attaacataaaagcttatttatttac 131  Q
    |||||||| |||||||||||||||||    
T  15515324 attaacatgaaagcttatttatttac 15515299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 9572808 - 9572733
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| |||||||||| |||||| |||||||| |||||||   ||||||| |||||||||||||||||| ||||    
T  9572808 aaaaaacaatttatgaagataaagtttttgttagtgagaacttat---gaattaatataaaagcttatttatttgcata 9572733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 26988158 - 26988285
Alignment:
Q  6 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattat 103  Q
    |||||||| ||||||| |||| || ||||||||||| ||||| |||||| | ||||||||   |||||||||| | || |||||||| |||||||||       
T  26988158 caaataaataagcttttatgtcttattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattgtcgttagtaaaaacttat--- 26988254  T
Q  104 gaattaacataaaagcttatttatttacata 134  Q
    ||||||||||||||||| |||||||| ||||    
T  26988255 gaattaacataaaagctaatttatttgcata 26988285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 6337831 - 6337705
Alignment:
Q  7 aaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatg 104  Q
    ||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | ||||||||   |||||||||| | |||| ||||| || |||||||   |    
T  6337831 aaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaatttttgttagcgagaacttat---g 6337735  T
Q  105 aattaacataaaagcttatttatttacata 134  Q
    ||||||||||||||||||||| ||| ||||    
T  6337734 aattaacataaaagcttatttgtttgcata 6337705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 37329493 - 37329361
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| ||||||||  |||||| ||||||| ||||||| ||| ||||| |||||| | ||||||||   |||||||||| | |||||||| |||| |||||    
T  37329493 ttatgcaaataaatgagcttttatgtattattcataaacttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgttggtgagaactt 37329394  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    || |   |||||||||||||||||||||||| ||||    
T  37329393 ataa---attaacataaaagcttatttatttgcata 37329361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 13038957 - 13039084
Alignment:
Q  6 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattat 103  Q
    |||||||| ||||||| || |||| ||||| ||||| | ||| |||||| | |||||||||  |||||||||| ||||||||||||||| ||    ||||    
T  13038957 caaataaataagcttttatatattattcatgagcttgttaaggtagtttatgaaaaaacaacttatgaagataaagttttcgttagtgagaa---gttat 13039053  T
Q  104 gaattaacataaaagcttatttatttacata 134  Q
    ||||||| ||||||| |||||||||| ||||    
T  13039054 gaattaatataaaagtttatttatttgcata 13039084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 38781181 - 38781239
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacatagcttaaaaataagtcaatcaaaac 158  Q
    |||||||||||||||||||| ||||||||| |||| || ||||||||| ||||| ||||    
T  38781181 ttatgaattaacataaaagcatatttatttgcataactcaaaaataagccaatccaaac 38781239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 31378809 - 31378854
Alignment:
Q  112 ataaaagcttatttatttacata-gcttaaaaataagtcaatcaaa 156  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||    
T  31378809 ataaaagcttatttatttgcataagcttaaaaataagtcaatcaaa 31378854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 134
Target Start/End: Complemental strand, 16889041 - 16888915
Alignment:
Q  6 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattat 103  Q
    |||||||| ||||||| ||||||| ||||||||||| | ||| |||||| | ||||||||   |||||||||| | ||||| ||||||| || ||||       
T  16889041 caaataaataagcttttatgtattattcataagcttgt-aaggtagtttatgaaaaaacagcttatgaagatacaattttcattagtgagaatttat--- 16888946  T
Q  104 gaattaacataaaagcttatttatttacata 134  Q
    || ||||||||||||||||||||||| ||||    
T  16888945 gacttaacataaaagcttatttatttgcata 16888915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 1565457 - 1565328
Alignment:
Q  7 aaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct--aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttat--- 100  Q
    ||||||| ||||||| ||| ||| ||| ||||||| ||||| |||||| |  |||||| ||  |||||||||| | |||||| ||||||  ||||||       
T  1565457 aaataaacaagcttttatgcattattcgtaagcttgtcaaggtagtttatgaaaaaaataacatatgaagatacaattttcgctagtgagtacttatgat 1565358  T
Q  101 -tatgaattaacataaaagcttatttattt 129  Q
     |||||| ||||||||||||||||||||||    
T  1565357 ttatgaaataacataaaagcttatttattt 1565328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 42591455 - 42591519
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| | ||||||||||||||| ||||| |   ||||| |||||| ||||||||||||||||    
T  42591455 tatgaagatacacttttcgttagtgaaagcttataa---attaaaataaaaacttatttatttacata 42591519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 47413445 - 47413509
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||| |||  ||| |||||||   ||||| ||||||||||||||||||||||||| ||||    
T  47413445 tatgaagatataatttgtgttggtgaaaa---attataaattaacataaaagcttatttatttgcata 47413509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 6337812 - 6337856
Alignment:
Q  110 acataaaagcttatttatttacat-agcttaaaaataagtcaatc 153  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||    
T  6337812 acataaaagcttatttatttacataagctctaaaataagtcaatc 6337856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 41576408 - 41576344
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||| |||| |||||||| |||||| |||  ||||||||||||| |||||||||| ||||    
T  41576408 tatgaagatataatttttgttagtgataactta-tat--attaacataaaagtttatttatttgcata 41576344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 46473156 - 46473231
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||  |||||||||| ||||||||||| | | |||||||   ||||||| |||||| ||||||||||| ||||    
T  46473156 aaaaaacaacttatgaagataaagttttcgttaataagaacttat---gaattaatataaaatcttatttatttgcata 46473231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 30181560 - 30181687
Alignment:
Q  6 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattat 103  Q
    |||||||||||||||| ||||||| ||||||||||| ||||| |||||| | ||||||||   ||||||||||  |||||| ||||||  |||||||       
T  30181560 caaataaagaagcttttatgtattattcataagcttgtcaaggtagtttatcaaaaaacagcttatgaagatactgttttcattagtgggaacttat--- 30181656  T
Q  104 gaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||| ||||    
T  30181657 gaattaacataaaagcttatttatttgcata 30181687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 14691366 - 14691253
Alignment:
Q  15 aagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaaca 112  Q
    ||||||| ||||||| ||||||||||| ||||  || ||| | |||||||||| |||||||||||| ||||||||||||| |||   |||||||||||||    
T  14691366 aagcttttatgtattattcataagcttgtcaatgtaatttatgaaaaaacaatttatgaagatataattttcgttagtgagaac---ttatgaattaaca 14691270  T
Q  113 taaaagcttatttattt 129  Q
    |||||| ||||||||||    
T  14691269 taaaaggttatttattt 14691253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 29390631 - 29390500
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaactta 99  Q
    |||| |||||||| || |||| ||||||| ||||||||||| | ||| |||||| | ||||||||  |||||||||| | ||||||||||  | || |||    
T  29390631 ttatgcaaataaataatctttgatgtattattcataagcttgtaaaggtagtttatgaaaaacaacttatgaagatacaattttcgttagctagaattta 29390532  T
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |   |||||||||||||||||||||||||| ||||    
T  29390531 t---gaattaacataaaagcttatttatttgcata 29390500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 33288088 - 33288029
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 129  Q
    |||||||||| |||||||||||||||||||   |||||||||||||||||| |||||||||||    
T  33288088 tatgaagatacagttttcgttagtgaaaac---ttatgaattaacataaaaacttatttattt 33288029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 34922936 - 34923070
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaacaatg---tatgaagatatagttttcgttagtgaaaac 96  Q
    |||| |||||||| ||||||| ||||||| |||||||| || ||||| |||||| ||||||| ||     | |||||||| | ||||||||||||| |||    
T  34922936 ttatgcaaataaataagcttttatgtattattcataagtttgtcaaggtagtttataaaaaaaaacagcttgtgaagatacacttttcgttagtgagaac 34923035  T
Q  97 ttattatgaattaacataaaagcttatttatttacata 134  Q
    ||||   ||| |||||||||||||||||||||| ||||    
T  34923036 ttat---gaactaacataaaagcttatttatttgcata 34923070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 29378650 - 29378782
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| ||||||| ||||||| || || || || ||||| |||||| | ||||||||   |||||||||| | ||||||||||| | |||||    
T  29378650 ttatgcaaataaataagcttttatgtattatttatgagtttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgttagtaagaactt 29378749  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    ||   |||||||| ||||||||||||||||| ||||    
T  29378750 at---gaattaacgtaaaagcttatttatttgcata 29378782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 46744026 - 46744090
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| | ||||||||||||| ||||||    |||||||||||||||||||||||||| ||||    
T  46744026 tatgaagatacaattttcgttagtgagaacttac---gaattaacataaaagcttatttattttcata 46744090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 48949782 - 48949863
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttat---tatgaattaacataaaagcttatttatttacata 134  Q
    |||||||| | |||||||||||| | ||||||||||||  |||||   ||| |||||| |||||| ||||||||||||||||    
T  48949782 aaaaaacagtttatgaagatataatattcgttagtgaaggcttataaatataaattaaaataaaaacttatttatttacata 48949863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 26331868 - 26331902
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  26331868 ttatgaattaacataaaagcttatttatttgcata 26331902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 33204937 - 33204971
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  33204937 ttatgaattaacataaaagcttatttatttgcata 33204971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 35809193 - 35809227
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    ||||||||||||||||||||||| |||||||||||    
T  35809193 ttatgaattaacataaaagcttaattatttacata 35809227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 1401176 - 1401205
Alignment:
Q  100 ttatgaattaacataaaagcttatttattt 129  Q
    ||||||||||||||||||||||||||||||    
T  1401176 ttatgaattaacataaaagcttatttattt 1401205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 23356473 - 23356440
Alignment:
Q  101 tatgaattaacataaaagcttatttatttacata 134  Q
    ||||||||||||||||||||||||||| ||||||    
T  23356473 tatgaattaacataaaagcttatttatatacata 23356440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 16932954 - 16932879
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    ||||||| || |||||||||| | ||||||||||| ||| ||||| |   ||||| |||||||||||||||| ||||||    
T  16932954 aaaaaaccatttatgaagatacaattttcgttagtaaaagcttataa---attaaaataaaagcttatttatatacata 16932879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 16938337 - 16938262
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    ||||||| || |||||||||| | ||||||||||| ||| ||||| |   ||||| |||||||||||||||| ||||||    
T  16938337 aaaaaaccatttatgaagatacaattttcgttagtaaaagcttataa---attaaaataaaagcttatttatatacata 16938262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 19914018 - 19914082
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||| ||| ||||||||||| ||| ||||| ||  ||||| |||||||||||||||||||||||    
T  19914018 tatgaagagataattttcgttagtaaaagcttat-at--attaaaataaaagcttatttatttacata 19914082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 22032824 - 22032899
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| ||||||| || | ||||||||||||| |||   |||| |||||| |||||| ||||||||||| ||||    
T  22032824 aaaaaacaatttatgaaggtacaattttcgttagtgagaac---ttataaattaagataaaaacttatttatttgcata 22032899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 33288155 - 33288203
Alignment:
Q  110 acataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaa 157  Q
    |||||||||||||||||||| ||| |||| ||||||| |||||||||||    
T  33288155 acataaaagcttatttatttgcataagctcaaaaatatgtcaatcaaaa 33288203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Original strand, 39279534 - 39279562
Alignment:
Q  101 tatgaattaacataaaagcttatttattt 129  Q
    |||||||||||||||||||||||||||||    
T  39279534 tatgaattaacataaaagcttatttattt 39279562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 47654438 - 47654363
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||| | ||||||| || | ||||||||||||| |||||||   ||||||| |||||| ||||||||||| ||||    
T  47654438 aaaaaacagtttatgaaggtacaattttcgttagtgagaacttat---gaattaagataaaaacttatttatttgcata 47654363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 4026931 - 4027062
Alignment:
Q  1 ttattcaaataaagaagctttaatgtattttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactta 99  Q
    |||| |||||||| ||||||| ||||||| |||||||||| ||||| |||||| | ||||||||   |||||||||| | |||| |||||||| ||||||    
T  4026931 ttatgcaaataaataagcttttatgtattatcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaatttttgttagtgagaactta 4027030  T
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |   |||||||||||| ||||||||||||| ||||    
T  4027031 t---gaattaacataatagcttatttatttgcata 4027062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 21788462 - 21788594
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| ||||||| || |||| ||||||||||| | |||||||||| | |||||||||  |||||||||| | ||||||||||||| | |||    
T  21788462 ttatgcaaataaataagcttttatttattattcataagcttgttaagatagtttatgaaaaaacaacttatgaagataaaattttcgttagtgagagctt 21788561  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    ||   ||||||| |||||||||||||||||| ||||    
T  21788562 at---gaattaatataaaagcttatttatttgcata 21788594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 8832534 - 8832594
Alignment:
Q  71 aagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||| | |||||||||||||||||||||   |||||||||||||||||||||||||| ||||    
T  8832534 aagatacaattttcgttagtgaaaacttat---gaattaacataaaagcttatttatttgcata 8832594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 36501566 - 36501464
Alignment:
Q  30 ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatt 128  Q
    ||||||||||| ||||| |||||| | ||||||||   |||||||||| | ||| ||||||||| |||| ||   |||||||||||||||||||||||||    
T  36501566 ttcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagataaaatttgcgttagtgagaactcat---gaattaacataaaagcttatttatt 36501470  T
Q  129 tacata 134  Q
    | ||||    
T  36501469 tgcata 36501464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 9140805 - 9140652
Alignment:
Q  6 caaataaagaagctttaatgtattttcataagcttatcaagatagtttcta-aaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatg 104  Q
    |||||||| || |||| ||||||| |||||| ||| ||||  |||||| |  ||||||| | ||||||||| || ||||||||  |||||||| || |      
T  9140805 caaataaataaccttttatgtattatcataaacttgtcaatgtagtttatgtaaaaacagtttatgaagatgtacttttcgttgatgaaaactcataa-- 9140708  T
Q  105 aattaacataaaagcttatttatttacata-gcttaaaaataagtcaatcaaaacgg 160  Q
     ||||||||||||| |||||||| | |||| ||| ||||||||||||||| ||||||    
T  9140707 -attaacataaaagtttatttatatgcataagctcaaaaataagtcaatccaaacgg 9140652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 38216092 - 38216156
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| | ||||||||||||| |||||||   || ||||||||||||||||||||||| ||||    
T  38216092 tatgaagatacaattttcgttagtgagaacttat---gagttaacataaaagcttatttatttgcata 38216156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 17317205 - 17317157
Alignment:
Q  114 aaaagcttatttatttacat-agcttaaaaataagtcaatcaaaacgga 161  Q
    |||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  17317205 aaaagcttatttatttacataagctcaaaaataagtcaatccaaacgga 17317157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 134
Target Start/End: Original strand, 37420008 - 37420043
Alignment:
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    ||||||||||||||||||||||||||||||| ||||    
T  37420008 attatgaattaacataaaagcttatttatttgcata 37420043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 42064886 - 42064988
Alignment:
Q  30 ttcataagcttatcaagatagtttctaaaaaac-aatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatt 128  Q
    ||||||||||| | ||| |||||| |||||||  ||  |||||||||||  ||||||||||| | |||||||   ||||||| |||||||||||||||||    
T  42064886 ttcataagcttgttaaggtagtttataaaaaaataacttatgaagatatcattttcgttagtaagaacttat---gaattaatataaaagcttatttatt 42064982  T
Q  129 tacata 134  Q
    | ||||    
T  42064983 tgcata 42064988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 7480949 - 7480848
Alignment:
Q  30 ttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 129  Q
    |||||||| || | ||| |||||| ||||||||||  || ||||||| | ||||| ||||| | |||||||   |||||||||||||| |||||||||||    
T  7480949 ttcataagtttgtgaaggtagtttataaaaaacaacttaggaagatacaattttcattagtcagaacttat---gaattaacataaaaacttatttattt 7480853  T
Q  130 acata 134  Q
     ||||    
T  7480852 gcata 7480848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 25836793 - 25836662
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| | ||||| ||||||| ||||||||||| ||||| |||||| | |||||||    |||||||| | | || |||||||||| |||||    
T  25836793 ttatgcaaataaatatgcttttatgtattattcataagcttgtcaaggtagtttatgaaaaaacggcttatgaagacacaattatcgttagtgagaactt 25836694  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    ||   |||| ||||||||||||||||||||| ||||    
T  25836693 at---gaat-aacataaaagcttatttatttgcata 25836662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 17546486 - 17546561
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||  |||||| ||||  |||||||||||||||||   |||| || ||||||||||  |||||||||||||||    
T  17546486 aaaaaacaacttatgaatatatcattttcgttagtgaaaac---ttataaactaacataaaaatttatttatttacata 17546561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 27881021 - 27880946
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| ||||||  |||| ||||||||| |||||||   ||||||||||| ||||||  |||||||||| ||||    
T  27881021 aaaaaacaatttatgaaagtatacttttcgttaatgaaaac---ttatgaattaagataaaaatttatttatttgcata 27880946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 29774818 - 29774877
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 129  Q
    |||||| ||| | ||||||||||||| |||||||   |||||||| |||||||||||||||||    
T  29774818 tatgaaaatacaattttcgttagtgagaacttat---gaattaacgtaaaagcttatttattt 29774877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 30382289 - 30382218
Alignment:
Q  60 aacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||| || ||||||| | ||||||||||||||| ||||| |   ||||| | |||||||||||||||||||||    
T  30382289 aacaatttaggaagatacaattttcgttagtgaaagcttataa---attaaaacaaaagcttatttatttacata 30382218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 134
Target Start/End: Complemental strand, 33321388 - 33321261
Alignment:
Q  6 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattat 103  Q
    |||||||| ||||||| |||| || ||||||||||| ||||| |||||| | ||||||||   |||||||||| | |||| |||||||| | |   || |    
T  33321388 caaataaataagcttttatgtcttattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaatttttgttagtgagagc---ttgt 33321292  T
Q  104 gaattaacataaaagcttatttatttacata 134  Q
    ||||||||||||| | |||||||||| ||||    
T  33321291 gaattaacataaaggtttatttatttgcata 33321261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 42839393 - 42839278
Alignment:
Q  9 ataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaat 107  Q
    ||||| ||| ||| ||||||| |||||||| || ||||| |||||| | |||| ||   |||||||||  | |||||||||| |||||||||| |   ||    
T  42839393 ataaataagtttttatgtattattcataagtttgtcaagttagtttatgaaaaccagcttatgaagatgcaattttcgttagagaaaacttatca---at 42839297  T
Q  108 taacataaaagcttattta 126  Q
    |||||||||||||||||||    
T  42839296 taacataaaagcttattta 42839278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 34286638 - 34286513
Alignment:
Q  7 aaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatga 105  Q
    ||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | |||||||   |||||||||| | |||||||||| || |||||||   ||    
T  34286638 aaataaataagcttttatgtattattcataagcttgtcaaggtagtttgtgaaaaacagcttatgaagatacaattttcgttagggagaacttat---ga 34286542  T
Q  106 attaacataaaagcttatttatttacata 134  Q
    ||||| |||||||||||||||||| ||||    
T  34286541 attaatataaaagcttatttatttgcata 34286513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 25333714 - 25333650
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| | |||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  25333714 tatgaagatacaattttcgttagtgaaaacttat---gaattaacataaaagcttatttatttacata 25333650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 35168508 - 35168360
Alignment:
Q  15 aagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaaca 112  Q
    ||||||| ||||||| ||||||||||| ||||| |||||| | |||||||| | |||||||||| | ||||||| ||| | ||    ||||||||||||     
T  35168508 aagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaaacagtttatgaagatacaattttcgtcagttagaagaacttatgaattaact 35168409  T
Q  113 taaaagcttatttatttacat-agcttaaaaataagtcaatcaaaacgg 160  Q
    |||||||| |||||||||||| |||| ||||||||| ||||| ||||||    
T  35168408 taaaagctgatttatttacataagctcaaaaataagccaatccaaacgg 35168360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 32975692 - 32975824
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaaa-acaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| ||||||| || |||| ||||||||||| ||||| |||||| | |||| ||||  |||||||||| | |||| ||| |||| |||||    
T  32975692 ttatgcaaataaataagcttttatatattattcataagcttgtcaaggtagtttatgaaaacacaacttatgaagatacaatttttgtttgtgagaactt 32975791  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    ||   ||||||| |||||||||||||||||| ||||    
T  32975792 at---gaattaatataaaagcttatttatttgcata 32975824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 25465891 - 25465796
Alignment:
Q  36 agcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    ||||| |||||  ||||| | ||||||||  |||||||||| | |||| |||| |||||||||||   |||||||||||||||||||||||||| ||||    
T  25465891 agcttgtcaaggaagtttatgaaaaacaacttatgaagatacaatttttgttactgaaaacttat---gaattaacataaaagcttatttatttgcata 25465796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 25671888 - 25671839
Alignment:
Q  82 ttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    ||||||||||||||||||| |   |||||||||||||||||||||||||||||    
T  25671888 ttcgttagtgaaaacttataa---attaacataaaagcttatttatttacata 25671839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 8752909 - 8752942
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacat 133  Q
    ||||||||||||||||||||||||||||||||||    
T  8752909 ttatgaattaacataaaagcttatttatttacat 8752942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 24350532 - 24350468
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||| ||||||||||| | |||||||   |||||||||||||| ||||||||||| ||||    
T  24350532 tatgaagatataattttcgttagtaagaacttat---gaattaacataaaatcttatttatttgcata 24350468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 34286619 - 34286668
Alignment:
Q  110 acataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaac 158  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  34286619 acataaaagcttatttatttacataagctcaaaaataagtcaatccaaac 34286668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 25333776 - 25333712
Alignment:
Q  36 agcttatcaagatagtttctaaaaaacaatgtatgaagatatagttttcgttagtgaaaacttat 100  Q
    ||||| ||||| |||||| | ||||||||  |||||||||| | |||||||||||||||||||||    
T  25333776 agcttgtcaaggtagtttatgaaaaacaacttatgaagatacaattttcgttagtgaaaacttat 25333712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 28879063 - 28879192
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaa-aacaatgtatgaagatatagttttcgttagtgaaa--ac 96  Q
    |||| |||||||| ||||||| ||||||| ||||||||||| ||||| |||||| | ||| |||||  |||||||||     ||| ||||||||||  ||    
T  28879063 ttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaataacaacttatgaagat-----ttttgttagtgaaagaac 28879157  T
Q  97 ttattatgaattaacataaaagcttatttatttacata 134  Q
    ||||   |||||||||||||||||||||||||| ||||    
T  28879158 ttat---gaattaacataaaagcttatttatttgcata 28879192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 32213078 - 32213122
Alignment:
Q  110 acataaaagcttatttatttacat-agcttaaaaataagtcaatc 153  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  32213078 acataaaagcttatttatttgcataagcttaaaaataagtcaatc 32213122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 35055484 - 35055558
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    ||||||| || |||||||||| | ||||||||||||| | |||||   ||||||| |||||||||||||||||||||||    
T  35055484 aaaaaaccatttatgaagatacaattttcgttagtgagagcttat---gaattaa-ataaaagcttatttatttacata 35055558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 32924236 - 32924167
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 129  Q
    |||||||||  |||||||||| | ||||| |||||||||||||||   ||||||| ||||||||||||||||||    
T  32924236 aaaaaacaacttatgaagataaaattttc-ttagtgaaaacttat---gaattaatataaaagcttatttattt 32924167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 2669751 - 2669785
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  2669751 ttatgaattaacataaaagcttatttattttcata 2669785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 2019623 - 2019594
Alignment:
Q  100 ttatgaattaacataaaagcttatttattt 129  Q
    ||||||||||||||||||||||||||||||    
T  2019623 ttatgaattaacataaaagcttatttattt 2019594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 9131000 - 9130939
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaacgg 160  Q
    ||||||||||||||||||| |||||||||| ||| |||| ||||  ||||||||| ||||||    
T  9131000 ttatgaattaacataaaagtttatttatttgcataagctcaaaatcaagtcaatccaaacgg 9130939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 32131445 - 32131577
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaa-aaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| ||||||| ||| ||| ||| |||| || ||||| |||||| | || ||||||  |||||||||| | |||||  |||||| |||||    
T  32131445 ttatgcaaataaataagcttttatgcattattcctaagtttgtcaaggtagtttatgaataaacaacctatgaagatacaattttcaatagtgagaactt 32131544  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    ||   |||||||||||||||||||| ||||| ||||    
T  32131545 at---gaattaacataaaagcttatctatttgcata 32131577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 38338864 - 38338800
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||  ||||||||||||| ||||||| |   ||||| |||||| ||||||||||||||||    
T  38338864 tatgaagatatgattttcgttagtgagaacttataa---attaaaataaaaacttatttatttacata 38338800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 42363330 - 42363266
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| | |||| |||||||| ||||| |||  |||||| |||||||||||||||||||||||    
T  42363330 tatgaagatacaatttttgttagtgagaactt-tta--aattaaaataaaagcttatttatttacata 42363266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 40240658 - 40240526
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||||||||||| ||||||| ||||||||| | || || |||||| | |||||||||  |||||||||| | ||||||||||||| | |||    
T  40240658 ttatgcaaataaagaagcttttatgtattattcataagcgtgtctaggtagtttatgaaaaaacaacttatgaagatacaattttcgttagtgagagctt 40240559  T
Q  99 attatgaattaacataaaagcttatttatttacata 134  Q
    ||   ||||||| |||||||||||||||||| ||||    
T  40240558 at---gaattaagataaaagcttatttatttgcata 40240526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 40581158 - 40581025
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct--aaaaaacaatgtatgaagatatagttttcgttagtgaaaact 97  Q
    |||| |||||||| ||||||| ||||||| || |||||||| ||||| |||||| |  ||||||||  ||||||||| | | ||||||||||||| ||||    
T  40581158 ttatgcaaataaataagcttttatgtattattaataagcttgtcaaggtagtttatgaaaaaaacagcgtatgaagaaacaattttcgttagtgagaact 40581059  T
Q  98 tattatgaattaacataaaagcttatttatttacata 134  Q
    |||   |||||||||||||| ||||||||||| ||||    
T  40581058 tat---gaattaacataaaatcttatttatttgcata 40581025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 48597891 - 48597820
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttattt 129  Q
    |||||||||  |||||||||| | ||||||| ||||| ||||||  ||||||||||||||||||||||||||||    
T  48597891 aaaaaacaacttatgaagatacaattttcgtcagtgagaactta--atgaattaacataaaagcttatttattt 48597820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 3845865 - 3845991
Alignment:
Q  6 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaa-aaaacaatgtatgaagatatagttttcgttagtgaaaacttattat 103  Q
    |||||||| ||||||| || |||| ||||||||||| ||||| |||||| | | ||||||   |||||||||| | |||||| |||||||||| |||       
T  3845865 caaataaataagcttttatatattattcataagcttgtcaagctagtttatgacaaaacagcatatgaagataca-ttttcgctagtgaaaacatat--- 3845960  T
Q  104 gaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||| ||||    
T  3845961 gaattaacataaaagcttatttatttgcata 3845991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 43080015 - 43079888
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaactt 98  Q
    |||| |||||||| ||||||| |||| || ||||||||||| ||||| |||||| | ||||||||   |||||||||| | ||||||| | ||| |||||    
T  43080015 ttatgcaaataaataagcttttatgtgttattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaagatacaattttcgtgattgagaactt 43079916  T
Q  99 attatgaattaacataaaagcttatttattt 129  Q
    ||   |||||||| |||||||||||||||||    
T  43079915 at---gaattaacttaaaagcttatttattt 43079888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 53218114 - 53217998
Alignment:
Q  8 aataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct-aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatga 105  Q
    |||||| ||| ||| ||||||| ||||||||||| ||||| |||||| | |||||||||  | |||||||| | ||||||||||||| |||   |||| |    
T  53218114 aataaataagattttatgtattattcataagcttgtcaaggtagtttatgaaaaaacaacttttgaagatacaattttcgttagtgagaac---ttataa 53218018  T
Q  106 attaacataaaagcttattt 125  Q
    ||||| ||||||||||||||    
T  53218017 attaaaataaaagcttattt 53217998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 52021251 - 52021354
Alignment:
Q  1 ttattcaaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttct--aaaaaacaatgtatgaagatatagttttcgttagtgaaaact 97  Q
    |||| |||||||| | ||||| ||||||| |||||||| || ||||| |||||| |  ||||||||   |||||||||||| ||||||||||||| ||||    
T  52021251 ttatgcaaataaatatgcttttatgtattattcataagattgtcaaggtagtttatgaaaaaaacagcttatgaagatataattttcgttagtgagaact 52021350  T
Q  98 tatt 101  Q
    ||||    
T  52021351 tatt 52021354  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 4974414 - 4974448
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  4974414 ttatgaattaacataaaagcttatttatttgcata 4974448  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 10667408 - 10667562
Alignment:
Q  6 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaa-aacaatgtatgaagatatagttttcgttagtgaaaacttattat 103  Q
    |||||||| ||||||  ||||||| ||||||||||| ||||  |||||| | ||| |||| | ||||||||||||  ||| ||||||||||||||| |||    
T  10667408 caaataaataagcttatatgtattattcataagcttgtcaatgtagtttatgaaacaacattttatgaagatataacttttgttagtgaaaactta-tat 10667506  T
Q  104 gaattaacataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaacgg 160  Q
      |||| | ||||||||| ||||||| ||| | |||| |||||| |||||| ||||||    
T  10667507 --attatcgtaaaagcttgtttatttgcataaacttataaataaatcaatccaaacgg 10667562  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 29830663 - 29830590
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttaca 132  Q
    |||||||| | |||||||||| | ||||||||||||| |||   |||| |||||| |||||| ||||||||||||||    
T  29830663 aaaaaacagtttatgaagatacaattttcgttagtgagaac---ttataaattaaaataaaaacttatttatttaca 29830590  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 38524191 - 38524225
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  38524191 ttatgaattaacataaaagcttatttatttgcata 38524225  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 46573437 - 46573403
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  46573437 ttatgaattaacataaaagcttatttatttgcata 46573403  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 10449050 - 10449114
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    ||||||| |||| ||||||||||||| |||||||   ||||||| |||||| ||||||||||| ||||    
T  10449050 tatgaaggtataattttcgttagtgagaacttat---gaattaagataaaaacttatttatttgcata 10449114  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 158
Target Start/End: Original strand, 10521164 - 10521316
Alignment:
Q  6 caaataaagaagctttaatgtatt-ttcataagcttatcaagatagtttctaaaa-aacaatgtatgaagatatagttttcgttagtgaaaacttattat 103  Q
    |||||||| ||||||  ||||||| ||||||||||| ||||  |||||| | ||| |||| | ||||||||||||  ||| ||||||||||||   ||||    
T  10521164 caaataaataagcttatatgtattattcataagcttgtcaatgtagtttatgaaacaacattttatgaagatataacttttgttagtgaaaac---ttat 10521260  T
Q  104 gaattaacataaaagcttatttatttacat-agcttaaaaataagtcaatcaaaac 158  Q
     ||||| | ||||||||| ||||||| ||| | |||| |||||| |||||| ||||    
T  10521261 aaattatcgtaaaagcttgtttatttgcataaacttataaataaatcaatccaaac 10521316  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 17752144 - 17752080
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| | ||||||||||| | ||||||| |   ||||||||||||| |||||||||||||||    
T  17752144 tatgaagatacaattttcgttagtaagaacttataa---attaacataaaagtttatttatttacata 17752080  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 19053464 - 19053400
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| | ||||||||||| | ||||||| |   ||||||||||||| |||||||||||||||    
T  19053464 tatgaagatacaattttcgttagtaagaacttataa---attaacataaaagtttatttatttacata 19053400  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 25341343 - 25341407
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||| | |||||||||| |||||||| |   ||||||| |||||| ||||||||||||||||    
T  25341343 tatgaagataaaattttcgttagggaaaacttgt---gaattaatataaaaacttatttatttacata 25341407  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 52895388 - 52895359
Alignment:
Q  100 ttatgaattaacataaaagcttatttattt 129  Q
    ||||||||||||||||||||||||||||||    
T  52895388 ttatgaattaacataaaagcttatttattt 52895359  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 10874057 - 10874138
Alignment:
Q  67 tatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacat-agcttaaaaataagtca 150  Q
    |||||||||| | |||| ||| ||||||||||||   |||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  10874057 tatgaagatacaattttagttggtgaaaacttat---gaattaacataaaagcttatttatttgcataagctaaaaaataagtca 10874138  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 12816902 - 12816850
Alignment:
Q  80 ttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||||| ||||    
T  12816902 ttttcgttagtgagaactta--atgaattaacataaaagcttatttatttgcata 12816850  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 2255838 - 2255871
Alignment:
Q  101 tatgaattaacataaaagcttatttatttacata 134  Q
    ||||||||||||||||||||||||||||||||||    
T  2255838 tatgaattaacataaaagcttatttatttacata 2255871  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 3210972 - 3210938
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  3210972 ttatgaattaacataaaagcttatttatttgcata 3210938  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 9201704 - 9201670
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  9201704 ttatgaattaacataaaagcttatttatttgcata 9201670  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 9202382 - 9202348
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    ||||||||||||||||||||||||||||| |||||    
T  9202382 ttatgaattaacataaaagcttatttattaacata 9202348  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 10755266 - 10755232
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  10755266 ttatgaattaacataaaagcttatttatttgcata 10755232  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 35071411 - 35071377
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  35071411 ttatgaattaacataaaagcttatttatttgcata 35071377  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 29623501 - 29623427
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||  |||||| ||| ||||||||||||||| |||   |||||||||||||| ||| ||||||||||| ||||    
T  29623501 aaaaaacaacttatgaaaataaagttttcgttagtgagaac---ttatgaattaacat-aaatcttatttatttgcata 29623427  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 32165285 - 32165210
Alignment:
Q  56 aaaaaacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatttacata 134  Q
    |||||||| | |||||||||| | ||||||||||||| | ||||| |   ||||| |||||| ||||||||||||||||    
T  32165285 aaaaaacagtttatgaagatacaattttcgttagtgagagcttataa---attaaaataaaaacttatttatttacata 32165210  T

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Target: scaffold0057 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 24440 - 24338
Alignment:
Q  30 ttcataagcttatcaagatagtttctaaaa-aacaatgtatgaagatatagttttcgttagtgaaaacttattatgaattaacataaaagcttatttatt 128  Q
    ||||||||||| ||||| |||||  ||||| |||||  || ||||||||| ||||||||||| |||||   || ||||||| ||||||||| ||||||||    
T  24440 ttcataagcttgtcaaggtagttgataaaataacaacttacgaagatataattttcgttagtaaaaac---ttgtgaattatcataaaagcctatttatt 24344  T
Q  129 tacata 134  Q
    | ||||    
T  24343 tgcata 24338  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 48611 - 48577
Alignment:
Q  100 ttatgaattaacataaaagcttatttatttacata 134  Q
    |||||||||||||||||||||||||||||| ||||    
T  48611 ttatgaattaacataaaagcttatttatttgcata 48577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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