View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_low_29 (Length: 244)
Name: NF4647_low_29
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 2465370 - 2465541
Alignment:
| Q |
17 |
acaactgtactttctgttatgattaatcaagagtttgttagaagaggttgttagaatcatatttggattgcagattttcccgagatgagctctttccaat |
116 |
Q |
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| T |
2465370 |
acaactgtactttctgttatgattaatcaagagtttgttagaagaggttgttagaatcatatttggattgtagatttttccgagatgacctctttccaat |
2465469 |
T |
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| Q |
117 |
ttccagtgagagagtgaatggaaacgtaacttacgagagcgaggaacagtagatggcgaaaacaatgaacag |
188 |
Q |
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| T |
2465470 |
ttccagtgagagagtgaatggaaacgtaacttacgagagcgatgaacagtagatggcgaaaacgatgaacag |
2465541 |
T |
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 2465531 - 2465567
Alignment:
| Q |
208 |
acgatgaacagaaattgaacctccttggttcggttcc |
244 |
Q |
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| T |
2465531 |
acgatgaacagcaattgaacctccttggttcggttcc |
2465567 |
T |
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