View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4647_low_34 (Length: 237)

Name: NF4647_low_34
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4647_low_34
NF4647_low_34
[»] chr1 (20 HSPs)
chr1 (1-131)||(30003728-30003858)
chr1 (63-131)||(40771772-40771840)
chr1 (63-129)||(11641067-11641133)
chr1 (63-129)||(36757486-36757552)
chr1 (63-128)||(36399295-36399360)
chr1 (63-129)||(40977488-40977554)
chr1 (63-128)||(30701915-30701980)
chr1 (63-128)||(52024223-52024288)
chr1 (63-131)||(9342645-9342713)
chr1 (63-127)||(16120439-16120503)
chr1 (63-131)||(25171347-25171415)
chr1 (63-129)||(6766565-6766631)
chr1 (63-129)||(17306150-17306216)
chr1 (70-131)||(15912345-15912406)
chr1 (62-131)||(42788542-42788611)
chr1 (73-129)||(6402420-6402476)
chr1 (72-131)||(27292834-27292893)
chr1 (64-131)||(42367297-42367364)
chr1 (63-131)||(42735165-42735233)
chr1 (70-129)||(48375199-48375257)
[»] chr8 (27 HSPs)
chr8 (63-131)||(14237474-14237542)
chr8 (63-129)||(623372-623438)
chr8 (63-129)||(36641858-36641924)
chr8 (63-129)||(24524281-24524347)
chr8 (63-129)||(40494580-40494646)
chr8 (65-131)||(42587250-42587316)
chr8 (63-131)||(18044619-18044688)
chr8 (61-129)||(38958759-38958827)
chr8 (63-129)||(5878512-5878578)
chr8 (64-129)||(3100492-3100557)
chr8 (74-128)||(22489285-22489339)
chr8 (63-131)||(132211-132279)
chr8 (62-129)||(13216720-13216787)
chr8 (63-129)||(616979-617045)
chr8 (73-126)||(8394545-8394598)
chr8 (69-130)||(38957365-38957426)
chr8 (63-131)||(2766048-2766116)
chr8 (63-131)||(4270108-4270176)
chr8 (63-131)||(11637976-11638041)
chr8 (63-131)||(24287954-24288022)
chr8 (62-130)||(33700072-33700140)
chr8 (63-131)||(41264004-41264072)
chr8 (63-129)||(4461471-4461537)
chr8 (98-131)||(32998643-32998676)
chr8 (98-130)||(33921686-33921718)
chr8 (74-130)||(35403712-35403768)
chr8 (62-130)||(40204721-40204789)
[»] scaffold0018 (1 HSPs)
scaffold0018 (62-131)||(67769-67838)
[»] chr4 (27 HSPs)
chr4 (62-131)||(19433357-19433426)
chr4 (63-131)||(25296579-25296647)
chr4 (62-129)||(2760729-2760796)
chr4 (63-128)||(29830540-29830605)
chr4 (63-131)||(26170181-26170249)
chr4 (63-131)||(35686601-35686669)
chr4 (61-131)||(17446632-17446701)
chr4 (63-129)||(38416650-38416716)
chr4 (63-129)||(44232077-44232143)
chr4 (62-131)||(17610474-17610543)
chr4 (68-131)||(50620491-50620554)
chr4 (62-129)||(55209573-55209640)
chr4 (63-129)||(45292028-45292094)
chr4 (63-128)||(9029449-9029514)
chr4 (63-131)||(4467520-4467588)
chr4 (63-131)||(12625445-12625513)
chr4 (63-131)||(54330690-54330758)
chr4 (62-129)||(43967919-43967986)
chr4 (66-128)||(26125905-26125967)
chr4 (62-128)||(38721534-38721600)
chr4 (73-131)||(55800993-55801051)
chr4 (72-130)||(12240186-12240244)
chr4 (63-129)||(35380894-35380960)
chr4 (63-131)||(47386286-47386354)
chr4 (70-131)||(25918397-25918455)
chr4 (68-129)||(5428772-5428833)
chr4 (63-131)||(55192018-55192086)
[»] chr3 (21 HSPs)
chr3 (63-131)||(6910528-6910596)
chr3 (63-131)||(28690442-28690510)
chr3 (63-131)||(32221027-32221095)
chr3 (62-129)||(33415995-33416062)
chr3 (63-129)||(20765392-20765458)
chr3 (63-129)||(27010474-27010540)
chr3 (63-129)||(42761483-42761549)
chr3 (70-130)||(21797751-21797811)
chr3 (65-129)||(42490198-42490262)
chr3 (63-131)||(43467742-43467810)
chr3 (63-129)||(13499335-13499401)
chr3 (63-129)||(27334731-27334797)
chr3 (63-129)||(39866141-39866207)
chr3 (64-131)||(36227739-36227806)
chr3 (63-129)||(21005489-21005555)
chr3 (73-131)||(38138019-38138077)
chr3 (63-131)||(19824492-19824560)
chr3 (73-131)||(42345592-42345650)
chr3 (62-131)||(44561978-44562047)
chr3 (63-129)||(30213999-30214068)
chr3 (76-131)||(43181369-43181424)
[»] chr7 (33 HSPs)
chr7 (61-131)||(16778699-16778769)
chr7 (63-129)||(28061515-28061581)
chr7 (63-129)||(36623504-36623570)
chr7 (63-129)||(46103370-46103436)
chr7 (63-129)||(47156223-47156289)
chr7 (62-131)||(3851268-3851337)
chr7 (70-131)||(11502587-11502648)
chr7 (62-131)||(20885297-20885366)
chr7 (64-129)||(48602632-48602697)
chr7 (63-131)||(25566548-25566616)
chr7 (63-131)||(32431358-32431426)
chr7 (63-129)||(41898184-41898250)
chr7 (67-131)||(39129930-39129994)
chr7 (63-131)||(42877580-42877648)
chr7 (66-129)||(23707426-23707489)
chr7 (63-129)||(38851847-38851913)
chr7 (63-131)||(6175020-6175088)
chr7 (63-131)||(46321152-46321220)
chr7 (67-129)||(40089922-40089984)
chr7 (63-129)||(42890344-42890410)
chr7 (63-126)||(21379943-21380006)
chr7 (72-131)||(30342267-30342326)
chr7 (65-129)||(7439099-7439163)
chr7 (63-131)||(36585856-36585924)
chr7 (63-131)||(40256250-40256317)
chr7 (63-130)||(36516034-36516101)
chr7 (63-117)||(8684025-8684079)
chr7 (63-129)||(35117321-35117387)
chr7 (73-123)||(41950790-41950840)
chr7 (70-131)||(44732206-44732266)
chr7 (72-128)||(7169320-7169376)
chr7 (60-128)||(7457742-7457810)
chr7 (63-131)||(26161793-26161861)
[»] scaffold0022 (1 HSPs)
scaffold0022 (62-131)||(100646-100715)
[»] chr6 (20 HSPs)
chr6 (63-131)||(18668688-18668756)
chr6 (63-131)||(20226298-20226366)
chr6 (63-131)||(20437017-20437085)
chr6 (63-131)||(22120282-22120350)
chr6 (63-129)||(24623941-24624007)
chr6 (62-131)||(22054966-22055035)
chr6 (63-129)||(6563422-6563488)
chr6 (63-129)||(19087958-19088024)
chr6 (62-131)||(21540628-21540697)
chr6 (63-128)||(32672013-32672078)
chr6 (62-125)||(1041024-1041087)
chr6 (62-129)||(24955395-24955462)
chr6 (63-129)||(32414679-32414745)
chr6 (63-128)||(4148128-4148193)
chr6 (63-131)||(17213792-17213860)
chr6 (63-128)||(12226172-12226237)
chr6 (60-130)||(29694078-29694148)
chr6 (92-131)||(28477947-28477986)
chr6 (92-131)||(29790400-29790439)
chr6 (63-129)||(17257651-17257717)
[»] chr5 (17 HSPs)
chr5 (62-129)||(978273-978340)
chr5 (62-129)||(33387415-33387482)
chr5 (63-129)||(9502627-9502693)
chr5 (63-129)||(14634157-14634223)
chr5 (63-131)||(18094081-18094149)
chr5 (63-131)||(27109882-27109950)
chr5 (63-130)||(12446867-12446934)
chr5 (69-131)||(11251308-11251370)
chr5 (65-129)||(30354872-30354936)
chr5 (63-126)||(33587469-33587532)
chr5 (63-125)||(8086031-8086093)
chr5 (63-131)||(40156392-40156462)
chr5 (67-131)||(7224359-7224423)
chr5 (70-129)||(34112153-34112212)
chr5 (62-131)||(38916252-38916321)
chr5 (63-131)||(25889457-25889525)
chr5 (63-129)||(11785726-11785792)
[»] chr2 (20 HSPs)
chr2 (63-129)||(5405192-5405258)
chr2 (63-129)||(7608245-7608311)
chr2 (63-129)||(19141066-19141132)
chr2 (62-131)||(44365351-44365420)
chr2 (63-129)||(8042022-8042088)
chr2 (62-131)||(11841592-11841661)
chr2 (63-128)||(33607569-33607634)
chr2 (63-129)||(2182960-2183026)
chr2 (62-128)||(13125144-13125210)
chr2 (62-131)||(9172145-9172214)
chr2 (74-129)||(36072370-36072425)
chr2 (62-129)||(36177579-36177646)
chr2 (72-131)||(36719333-36719392)
chr2 (63-127)||(24093073-24093137)
chr2 (63-131)||(7800041-7800109)
chr2 (63-131)||(32774786-32774854)
chr2 (91-131)||(39358329-39358369)
chr2 (94-129)||(44645067-44645102)
chr2 (63-128)||(6223263-6223328)
chr2 (92-128)||(33228474-33228510)
[»] scaffold0056 (1 HSPs)
scaffold0056 (63-128)||(71157-71222)
[»] scaffold0003 (1 HSPs)
scaffold0003 (70-129)||(161844-161903)
[»] scaffold0295 (1 HSPs)
scaffold0295 (63-129)||(13717-13783)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 30003858 - 30003728
Alignment:
Q  1 gttagttatggtggaccaaatttaaagagtgtatatggatagatttctcattttgatcgttttactccctccgtttcaaaatacttgtctaagtcaacca 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| ||    
T  30003858 gttagttatggtggactaaatttaaagagtgtatatggatagatttctcattttgatcattttactccctccgtttcaaaatacatgtcaaagtcaatca 30003759  T
Q  101 cttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||||||||| |||||||||||||    
T  30003758 cttcacatatgtcaatgtacaattttgaccg 30003728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 40771772 - 40771840
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||    
T  40771772 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatggcaatgctcaattttgaccg 40771840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 11641067 - 11641133
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  11641067 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 11641133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 36757486 - 36757552
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  36757486 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 36757552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 36399360 - 36399295
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||    
T  36399360 tactccctccgtttcaaaatacatgtccaagtcaacaacttcacatatgccaatgcacaattttga 36399295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 40977488 - 40977554
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||    
T  40977488 tactccatccgtttcaaaatacatgtccaagtcaaccacttcacacatgccaatgcacaattttgac 40977554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 30701980 - 30701915
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    |||||||||||||| ||||||| |||| |||||||| | |||||||||||||||||||||||||||    
T  30701980 tactccctccgttttaaaatacatgtccaagtcaacaaattcacatatgtcaatgcacaattttga 30701915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 52024288 - 52024223
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||  ||||||||||||||||    
T  52024288 tactccctccgtttcaaaatacatgtccaagtcaacaacttcacatataccaatgcacaattttga 52024223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 9342645 - 9342713
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||| ||||||||||||||  |||  ||||||||||||||||||||| |||||||||||||||||||    
T  9342645 tactccatccgtttcaaaatatatgttcaagtcaaccacttcacatatgccaatgcacaattttgaccg 9342713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 16120439 - 16120503
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttg 127  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||||| |||||||||| ||||    
T  16120439 tactccctccgtttcaaaatacatgttcaagtcaaccacttcacatatgccaatgcacaactttg 16120503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 25171415 - 25171347
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||| ||||||||||||||| |||| ||||||||| ||||||||||| |||| ||||||||||||||    
T  25171415 tactccatccgtttcaaaatacatgtcaaagtcaaccccttcacatatgccaatacacaattttgaccg 25171347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 6766631 - 6766565
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||| ||||||||||||||| ||| ||||||||||||||||||||||  |||||| |||||||||    
T  6766631 tactccatccgtttcaaaatacatgtttaagtcaaccacttcacatatgctaatgcataattttgac 6766565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 17306216 - 17306150
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||| ||||||||||||||||| |||| |||||||| |||||||||||| ||||||| |||||||||    
T  17306216 tacttcctccgtttcaaaatacatgtccaagtcaactacttcacatatgccaatgcataattttgac 17306150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 15912345 - 15912406
Alignment:
Q  70 tccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||| ||||    
T  15912345 tccgtttcaaaatgcatgtccaagtcaaccacttcacatatgccaatgcacaattttaaccg 15912406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 42788542 - 42788611
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||| ||| ||||||| |||  ||| |||| ||||||||||||||||||||||||||||||||    
T  42788542 ttactccctccattttaaaatacatgttcaagacaactacttcacatatgtcaatgcacaattttgaccg 42788611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 6402420 - 6402476
Alignment:
Q  73 gtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  6402420 gtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 6402476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 27292893 - 27292834
Alignment:
Q  72 cgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||||| |||| |||||||||||||||||||||  |||||| |||||||||||    
T  27292893 cgtttcaaaatacatgtcaaagtcaaccacttcacatatgctaatgcataattttgaccg 27292834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 42367297 - 42367364
Alignment:
Q  64 actccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||| |||||||||||||||| | || ||||||| |||||||||||||  ||||||||||||||||||    
T  42367297 actctctccgtttcaaaatacatatccaagtcaatcacttcacatatgctaatgcacaattttgaccg 42367364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 42735165 - 42735233
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||| ||||||||||| |||| ||||||| |||| |||| ||| ||||| |||||||||||||    
T  42735165 tactccctccatttcaaaatacatgtccaagtcaatcactacacacatgccaatgtacaattttgaccg 42735233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 48375257 - 48375199
Alignment:
Q  70 tccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||||||||||| ||||||||| |||||||||||| ||  |||| ||||||||||||    
T  48375257 tccgtttcaaaatacatgtctaagtgaaccacttcacacatcccaat-cacaattttgac 48375199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 14237542 - 14237474
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  14237542 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgtcaatgcacaattttgaccg 14237474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 623438 - 623372
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  623438 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgtcaatgcataattttgac 623372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 36641858 - 36641924
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||    
T  36641858 tactccctccgtttcaaaatacatgtctaagtcaaccacttcacatatgccaatgcataattttgac 36641924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 24524347 - 24524281
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||||||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||||||    
T  24524347 tactccctccgttccaaaatacatgtccaagtcaaccatttcacatatgtcaatgcacaattttgac 24524281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 40494646 - 40494580
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  40494646 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 40494580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 42587250 - 42587316
Alignment:
Q  65 ctccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||||    
T  42587250 ctccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcacaatttttaccg 42587316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 18044688 - 18044619
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaa-gtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||||    
T  18044688 tactccctccgtttcaaaatacatgtataaagtcaaccacttcacatatgccaatgcacaattttgaccg 18044619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 38958759 - 38958827
Alignment:
Q  61 tttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||| |||||||||| || |||  |||||||||||||||||||||||||||||||||||||||    
T  38958759 tttactcccttcgtttcaaaacacatgttcaagtcaaccacttcacatatgtcaatgcacaattttgac 38958827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 5878578 - 5878512
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||| | |||| ||||||||||||||| | |||||||||||||||||||||    
T  5878578 tactccctccgtttcaaaatgcatgtccaagtcaaccacttcaaacatgtcaatgcacaattttgac 5878512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 3100492 - 3100557
Alignment:
Q  64 actccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||||||||||||||||| |||| || |||| ||||||| |||||||||||||||||||||||    
T  3100492 actccctccgtttcaaaatacatgtccaaatcaatcacttcagatatgtcaatgcacaattttgac 3100557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 22489285 - 22489339
Alignment:
Q  74 tttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  22489285 tttcaaaatacatgtttaagtcaaccacttaacatatgtcaatgcacaattttga 22489339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 132279 - 132211
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||| ||||||| |||| |||||||| |||||||| ||| ||||| |||||||||||||    
T  132279 tactccctccgttttaaaatacatgtccaagtcaactacttcacacatgccaatgtacaattttgaccg 132211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 13216720 - 13216787
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||| |||| ||| ||| ||||| |||||||||||||||||| ||| |||||||||||||||    
T  13216720 ttactccctctgttttaaattacatgtcttagtcaaccacttcacataggtcgatgcacaattttgac 13216787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 617045 - 616979
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| |||||||| |||| | ||||| ||||||| |||||||||    
T  617045 tactccctccgtttcaaaatacatgtccaagtcaacaacttaaaatatgacaatgcaaaattttgac 616979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 8394598 - 8394545
Alignment:
Q  73 gtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaatttt 126  Q
    |||||||||||| |||| ||||||||||||||| ||||||||||| ||||||||    
T  8394598 gtttcaaaatacatgtccaagtcaaccacttcatatatgtcaatgtacaatttt 8394545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 38957426 - 38957365
Alignment:
Q  69 ctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgacc 130  Q
    |||||||||||||||  |||| ||||||| ||||||||| ||| ||||||||||||||||||    
T  38957426 ctccgtttcaaaatatatgtccaagtcaagcacttcacacatgccaatgcacaattttgacc 38957365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 2766048 - 2766116
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||| ||||||||||||||||| |||| || ||| ||| |||||| |||||||||||||||||| ||||    
T  2766048 tacttcctccgtttcaaaatacatgtccaaatcagccatttcacacatgtcaatgcacaattttaaccg 2766116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 4270108 - 4270176
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||| |||| ||||||| |||| || | ||||||||||||||||| |||||| |||||||||||    
T  4270108 tactccctctgttttaaaatacatgtccaaattaaccacttcacatatgttaatgcataattttgaccg 4270176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 11638041 - 11637976
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||| ||||||||||||||||| |    ||||||||||||||| ||||||||||| |||||||||||||    
T  11638041 tacttcctccgtttcaaaatacata---aagtcaaccacttcatatatgtcaatgaacaattttgaccg 11637976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 24288022 - 24287954
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||| |||||||||||||||| ||||  | ||||| |||||||| ||| |||||||||| ||||||||    
T  24288022 tactctctccgtttcaaaatacatgtcgcaatcaacgacttcacacatgccaatgcacaactttgaccg 24287954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 33700072 - 33700140
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgacc 130  Q
    |||||||||||||| |||||||| ||||  ||||||||||| |||| ||| |||| ||||| |||||||    
T  33700072 ttactccctccgttccaaaatacatgtcgcagtcaaccactgcacacatgccaatacacaactttgacc 33700140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 41264072 - 41264004
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||| ||| ||||||||||| |||| ||||||| ||||||||||||  |||| || |||||||||||    
T  41264072 tactccatccatttcaaaatacatgtccaagtcaatcacttcacatataccaatacataattttgaccg 41264004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 4461471 - 4461537
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||||||| |||||||||| ||||   |||||| |||||||| ||| | |||||||||||||||    
T  4461471 tactccctccgcttcaaaatacatgtcgttgtcaactacttcacacatgacgatgcacaattttgac 4461537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 32998676 - 32998643
Alignment:
Q  98 ccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||| |||||||||||||||||||    
T  32998676 ccacttcacatatgccaatgcacaattttgaccg 32998643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 33921718 - 33921686
Alignment:
Q  98 ccacttcacatatgtcaatgcacaattttgacc 130  Q
    |||||||||||||||||||| ||||||||||||    
T  33921718 ccacttcacatatgtcaatgtacaattttgacc 33921686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 35403768 - 35403712
Alignment:
Q  74 tttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgacc 130  Q
    ||||||||||| |||| |||| || || |||||||||||||| | ||||||||||||    
T  35403768 tttcaaaatacatgtccaagttaatcatttcacatatgtcaacgtacaattttgacc 35403712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 40204721 - 40204789
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgacc 130  Q
    ||||||||||||||||||| ||  ||||  ||||||||||| ||||  || |||| |||||||||||||    
T  40204721 ttactccctccgtttcaaagtatatgtcacagtcaaccactgcacacgtgccaatacacaattttgacc 40204789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 67769 - 67838
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  67769 ttactccatccgtttcaaaatacatgtctaagtcaaccacttcacatatgccaatgcacaattttgaccg 67838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 19433357 - 19433426
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||    
T  19433357 ttactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcacaattttgaccg 19433426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 25296579 - 25296647
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||    
T  25296579 tactccctccgtttcaaaatacatgtataagtcaaccacttcacacatgtcaatgcacaattttgaccg 25296647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 2760729 - 2760796
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  2760729 ttactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgtcaatgcataattttgac 2760796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 29830605 - 29830540
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||    
T  29830605 tactccctccgtttcaaaatacatgtctaagtgaaccacttcacatatgtcaatgcataattttga 29830540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 26170249 - 26170181
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||    
T  26170249 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgacaatgctcaattttgaccg 26170181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 35686669 - 35686601
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||||||||    
T  35686669 tactccctccgtttcaaaatgcatgtccaagtcaaccacttcacatatgccaatgcacaattttgaccg 35686601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 17446632 - 17446701
Alignment:
Q  61 tttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||| |||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  17446632 tttactccc-ccgtttcaaaatacatgtccaagtcaactacttcacatatgtcaatgcacaattttgaccg 17446701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 38416650 - 38416716
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  38416650 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 38416716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 44232077 - 44232143
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  44232077 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgacaatgcataattttgac 44232143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 17610543 - 17610474
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||||||||||||||  |||  ||||||||||||||||||||| |||||||||||||||||||    
T  17610543 ttactccctccgtttcaaaatatatgttcaagtcaaccacttcacatatgccaatgcacaattttgaccg 17610474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 50620491 - 50620554
Alignment:
Q  68 cctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  50620491 cctccgttttaaaatagatgtctaagtcaaccacttcacatatgtcaatgcacaattttaaccg 50620554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 55209573 - 55209640
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||||| |||||||||    
T  55209573 ttactccctccgtttcaaaatacatgtccaagtcaaccactttacatatgccaatgcataattttgac 55209640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 45292094 - 45292028
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||| |||||||||    
T  45292094 tactccctccgtttcaaaatacatgtccaagtcaactacttcacatatgccaatgcataattttgac 45292028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 9029449 - 9029514
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    |||||||||||||| ||||||| ||| |||||||| ||||||||||||| ||||||||||||||||    
T  9029449 tactccctccgttttaaaatacatgtttaagtcaatcacttcacatatgccaatgcacaattttga 9029514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 4467520 - 4467588
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||||||| |||| ||||||||||||||| | ||| |||||||| ||||||||||    
T  4467520 tactccctccgtttcaaaatacatgtccaagtcaaccacttcaaacatgccaatgcacgattttgaccg 4467588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 12625513 - 12625445
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||||||| |||  |||||||||||| ||||||||  ||||||||||||||||||    
T  12625513 tactccctccgtttcaaaatacatgttcaagtcaaccactccacatatgctaatgcacaattttgaccg 12625445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 54330690 - 54330758
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||| ||||||||||||||||  |||| ||||||| |||||||||||||||||||||||||||| ||||    
T  54330690 tacttcctccgtttcaaaatagatgtccaagtcaatcacttcacatatgtcaatgcacaattttaaccg 54330758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 43967986 - 43967919
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||| ||||||||||||||| |||  ||||||||||||||||||||| ||||||| |||||||||    
T  43967986 ttactccatccgtttcaaaatacatgttcaagtcaaccacttcacatatgccaatgcataattttgac 43967919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 26125967 - 26125905
Alignment:
Q  66 tccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    ||||||||||||||||||| |||  ||||||| ||||||||||||| ||||||||||||||||    
T  26125967 tccctccgtttcaaaatacatgttcaagtcaatcacttcacatatggcaatgcacaattttga 26125905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 38721600 - 38721534
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    ||||||| |||||||||||| || |||  ||||||||||||||||||||| ||||||||||||||||    
T  38721600 ttactccttccgtttcaaaagacatgttcaagtcaaccacttcacatatgccaatgcacaattttga 38721534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 55801051 - 55800993
Alignment:
Q  73 gtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||| |||| ||||||||||||| | |||||||||||||||||||||||||    
T  55801051 gtttcaaaatacatgtcaaagtcaaccactttatatatgtcaatgcacaattttgaccg 55800993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 12240186 - 12240244
Alignment:
Q  72 cgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgacc 130  Q
    ||||||||||||  |||| ||||||||||||||||||||| |||| |||||||||||||    
T  12240186 cgtttcaaaatatatgtcaaagtcaaccacttcacatatgccaatacacaattttgacc 12240244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 35380894 - 35380960
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||| ||||||||||||||||| |||| ||||||||||||||||||||| ||||  | |||||||||    
T  35380894 tacttcctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatatataattttgac 35380960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 47386286 - 47386354
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||| ||||||||||||||| |||| |||||||| |||||||| ||| ||||| | |||||||||||    
T  47386286 tactccatccgtttcaaaatacatgtccaagtcaactacttcacacatgccaatgtataattttgaccg 47386354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 25918455 - 25918397
Alignment:
Q  70 tccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||||||| ||| |||||||||   |||||||||||||||| |||||||||||||    
T  25918455 tccgtttcaaaatacatgtttaagtcaac---ttcacatatgtcaatgtacaattttgaccg 25918397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 5428833 - 5428772
Alignment:
Q  68 cctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||| |||||||||||| |||   |||||||||||||||| ||||||||| |||||||||||    
T  5428833 cctctgtttcaaaatacatgtaacagtcaaccacttcacacatgtcaatgtacaattttgac 5428772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 55192086 - 55192018
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||| |||||||||||||||  |||| || || | ||||||||||||| |||| ||||||||||||||    
T  55192086 tactcactccgtttcaaaatatatgtccaaatcgatcacttcacatatgccaatccacaattttgaccg 55192018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 6910596 - 6910528
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||    
T  6910596 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcacaattttgaccg 6910528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 28690510 - 28690442
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  28690510 tactccctccttttcaaaatacatgtccaagtcaaccacttcacatatgtcaatgcacaattttgaccg 28690442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 32221095 - 32221027
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||    
T  32221095 tactccctccgttttaaaatacatgtcaaagtcaaccacttcatatatgtcaatgcacaattttgaccg 32221027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 33416062 - 33415995
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||| ||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||    
T  33416062 ttacttcctccgtttcaaaatagatgtccaagtcaaccacttcacatatgtcaatgcacaattttgac 33415995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 20765458 - 20765392
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  20765458 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 20765392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 27010474 - 27010540
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  27010474 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 27010540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 42761483 - 42761549
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  42761483 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 42761549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 21797811 - 21797751
Alignment:
Q  70 tccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgacc 130  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||    
T  21797811 tccgtttcaaaatacatgtctaagtcaaccacttcacatatgttaatgcataattttgacc 21797751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 42490198 - 42490262
Alignment:
Q  65 ctccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  42490198 ctccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 42490262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 43467742 - 43467810
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||| ||||||||||||||| ||||||||||||||| || | |||||||||||||||||||||||||    
T  43467742 tactccatccgtttcaaaatacatgtctaagtcaaccattttatatatgtcaatgcacaattttgaccg 43467810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 13499335 - 13499401
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||| ||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  13499335 tactccctccatttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 13499401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 27334731 - 27334797
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||| |||||||||    
T  27334731 tactccctccgtttcaaaatacatgttcaagtcaaccacttcacatatgccaatgcataattttgac 27334797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 39866141 - 39866207
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||| |||||||||    
T  39866141 tactccctccgtttcaaaatacatgttcaagtcaaccacttcacatatgccaatgcataattttgac 39866207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 36227806 - 36227739
Alignment:
Q  64 actccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||||||||||||  |||| ||||||| ||||||||| ||| |||||||||||||||||||    
T  36227806 actccctccgtttcaaaatatatgtccaagtcaatcacttcacacatgccaatgcacaattttgaccg 36227739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 21005555 - 21005489
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||| ||||||||||||||| |||| |||||||||| |||||||||| ||||||| |||||||||    
T  21005555 tactccatccgtttcaaaatacatgtccaagtcaaccatttcacatatgccaatgcataattttgac 21005489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 38138077 - 38138019
Alignment:
Q  73 gtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||    
T  38138077 gtttcaaaatacatgtccaagtcaaccacttcacacatgccaatgcacaattttgaccg 38138019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 19824560 - 19824492
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||| ||||||| |||||||| |||| ||||||||||||||| ||||||||| |||||||||| ||||    
T  19824560 tactctctccgttacaaaatacatgtccaagtcaaccacttcaaatatgtcaacgcacaattttaaccg 19824492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 42345650 - 42345592
Alignment:
Q  73 gtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||| |||| |||||||||| |||||||||||| ||| |||||||||||||    
T  42345650 gtttcaaaatacatgtccaagtcaaccatttcacatatgtcgatgtacaattttgaccg 42345592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 44562047 - 44561978
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||| |||||||||| ||||  |||||||||||||||| ||| |||| ||||| ||||||||    
T  44562047 ttactccctccgattcaaaatacatgtcgcagtcaaccacttcacacatgccaattcacaactttgaccg 44561978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 30214068 - 30213999
Alignment:
Q  63 tactccctccgtttcaaaatact---tgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||||| ||||||||||| |   |||| ||||||||||||||||||||| | ||||| |||||||||    
T  30214068 tactccctctgtttcaaaataatagatgtccaagtcaaccacttcacatatgccgatgcataattttgac 30213999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 43181369 - 43181424
Alignment:
Q  76 tcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||| |||| || ||||||||||| || ||||||||||| |||||||||||    
T  43181369 tcaaaatacatgtccaaatcaaccacttctcacatgtcaatgcataattttgaccg 43181424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 16778769 - 16778699
Alignment:
Q  61 tttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||    
T  16778769 tttacttcctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcacaattttgaccg 16778699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 28061515 - 28061581
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  28061515 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 28061581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 36623570 - 36623504
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  36623570 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 36623504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 46103370 - 46103436
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  46103370 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 46103436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 47156289 - 47156223
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  47156289 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 47156223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 3851337 - 3851268
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||| |||||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||    
T  3851337 ttactccatccgtttcaaaatgtatgtctaagtcaaccacttcacatatgccaatgcacaattttgaccg 3851268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 11502587 - 11502648
Alignment:
Q  70 tccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||    
T  11502587 tccgtttcaaaatacatgtcaaagtcaaccacttcacatatgccaatgcacaattttgaccg 11502648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 20885366 - 20885297
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||    
T  20885366 ttactccctccatttcaaaatacatgtccaagtcaaccacttcacacatgccaatgcacaattttgaccg 20885297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 48602697 - 48602632
Alignment:
Q  64 actccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  48602697 actccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 48602632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 25566548 - 25566616
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||||| ||||| |||||||||||||    
T  25566548 tactccctccgtttcaaaatacatgtccaagtcaaccatttcacatatgccaatgtacaattttgaccg 25566616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 32431358 - 32431426
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||| ||||||||||||||| |||| ||||||||||||| ||||||| |||||||||||||||||||    
T  32431358 tactccatccgtttcaaaatacatgtccaagtcaaccactttacatatgccaatgcacaattttgaccg 32431426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 41898250 - 41898184
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||| |||||||||    
T  41898250 tactccctccgtttcaaaatacatgtccaagtcaatcacttcacatatgccaatgcataattttgac 41898184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 39129930 - 39129994
Alignment:
Q  67 ccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||| |||| |||||||| |||||||||||| |||||||| ||||||||||    
T  39129930 ccctccgtttcaaaatacatgtcaaagtcaactacttcacatatgccaatgcacgattttgaccg 39129994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 42877648 - 42877580
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||| ||| |||||||||||| |||| ||||||||||||||||||||| ||||||||| |||||||||    
T  42877648 tactctctctgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcacagttttgaccg 42877580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 23707426 - 23707489
Alignment:
Q  66 tccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||| |||| |||||||||||  ||||||||||||||||||||||||||||| |||||||||    
T  23707426 tccctctgttttaaaatacttgttcaagtcaaccacttcacatatgtcaatgcataattttgac 23707489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 38851847 - 38851913
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||||||| ||||||| |||||||||    
T  38851847 tactccctgcgtttcaaaatacatgtccaagtcaaccactttacatatgccaatgcataattttgac 38851913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 6175088 - 6175020
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||| |||| ||||||||||| | |  |||||||| ||||||||||||||||||||||||||||||||    
T  6175088 tactcactccatttcaaaatacatattcaagtcaactacttcacatatgtcaatgcacaattttgaccg 6175020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 46321152 - 46321220
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||| |||||||||||| |||| || |||||||||| |||||||  ||||||||||||||||||    
T  46321152 tactccctctgtttcaaaatacatgtccaaatcaaccactttacatatgctaatgcacaattttgaccg 46321220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 40089922 - 40089984
Alignment:
Q  67 ccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||| |||| |||||||| | |||||||||| ||||||| |||||||||    
T  40089922 ccctccgtttcaaaatacatgtccaagtcaactatttcacatatgccaatgcataattttgac 40089984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 42890344 - 42890410
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||| ||||||||||||||  |||| ||||||||||||| ||||||| ||||||| |||||||||    
T  42890344 tactccttccgtttcaaaatatatgtccaagtcaaccactttacatatgccaatgcataattttgac 42890410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 21380006 - 21379943
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaatttt 126  Q
    |||||| ||||||| |||||||  |||||| |||||||||||||||||||||||| | ||||||    
T  21380006 tactccatccgtttgaaaatacacgtctaaatcaaccacttcacatatgtcaatgtataatttt 21379943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 30342326 - 30342267
Alignment:
Q  72 cgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||||| |||| || |||||||||||||| ||||||||| |||||||| ||||    
T  30342326 cgtttcaaaatacatgtccaaatcaaccacttcacacatgtcaatgtacaattttaaccg 30342267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 7439163 - 7439099
Alignment:
Q  65 ctccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||| ||||||| ||||||| |||| | ||||| ||||||||||||  |||||||||||||||||    
T  7439163 ctccttccgttttaaaatacatgtccaggtcaatcacttcacatataccaatgcacaattttgac 7439099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 36585924 - 36585856
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||| | ||||||||||||| |||| ||||||| ||||||||||||| |||  || |||||||||||    
T  36585924 tactccattcgtttcaaaatacatgtccaagtcaagcacttcacatatgccaacacataattttgaccg 36585856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 40256317 - 40256250
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||| |||||||||||| |||  |||||||| |||||||| |||  ||||||||||||||||||    
T  40256317 tactccctc-gtttcaaaatacatgttcaagtcaactacttcacacatgcaaatgcacaattttgaccg 40256250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 36516101 - 36516034
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgacc 130  Q
    ||||||||||||||| |||||| ||||  ||||||||||||| || ||| |||| ||||| |||||||    
T  36516101 tactccctccgtttctaaatacatgtcagagtcaaccacttcgcacatgccaatacacaactttgacc 36516034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 8684079 - 8684025
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatg 117  Q
    |||||| ||||||||||||||| ||| ||| |||| ||||||||| |||||||||    
T  8684079 tactccatccgtttcaaaatacatgtttaaatcaatcacttcacacatgtcaatg 8684025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 35117387 - 35117321
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||||| |||| ||||||  |||| ||||||| ||||| ||||||||||||| | |||||||||    
T  35117387 tactccctcagttttaaaatatatgtcaaagtcaatcactttacatatgtcaatgtataattttgac 35117321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 41950840 - 41950790
Alignment:
Q  73 gtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaat 123  Q
    |||| ||||||| | || |||||||| ||||||||||||||||||||||||    
T  41950840 gtttgaaaatacatatccaagtcaactacttcacatatgtcaatgcacaat 41950790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 44732266 - 44732206
Alignment:
Q  70 tccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||| ||| |||| ||||||| ||||||||| || |||||| |||||||||||||    
T  44732266 tccgtttcaaa-tacatgtccaagtcaatcacttcacacatatcaatgtacaattttgaccg 44732206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 7169376 - 7169320
Alignment:
Q  72 cgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    ||||||||||||  ||||  ||||||| | |||| ||||||||||||||||||||||    
T  7169376 cgtttcaaaatatatgtcacagtcaactatttcatatatgtcaatgcacaattttga 7169320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 7457742 - 7457810
Alignment:
Q  60 ttttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    ||||||||| ||  ||||||||||| | |  || ||||||||||||||||||| ||| |||||||||||    
T  7457742 ttttactccatctatttcaaaatacatattcaattcaaccacttcacatatgttaatacacaattttga 7457810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 26161861 - 26161793
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||| |||| |||||   ||||  |||||| ||||||||| |||||||||||||| ||||||||    
T  26161861 tactccctctgttttaaaatttgtgtcgcagtcaatcacttcacacatgtcaatgcacaactttgaccg 26161793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 100646 - 100715
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||||||||||||||    
T  100646 ttactccctccgtttcaaaatacatgtccaagtcaacaacttcacatatgccaatgcacaattttgaccg 100715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 18668688 - 18668756
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||||||||||||||    
T  18668688 tactccctccgtttcaaaatacatgtccaagtcaaccacttcatatatgccaatgcacaattttgaccg 18668756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 20226298 - 20226366
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||||    
T  20226298 tactccctccgtttcaaaatacatgtcaaagtcaaccacttcacatatgccaatgcacaatttttaccg 20226366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 20437017 - 20437085
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| ||||    
T  20437017 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgtcaatgcataattttaaccg 20437085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 22120282 - 22120350
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||||    
T  22120282 tactccctccgtttcaaaatacatgtcaaagtcaaccacttcacatatgccaatgcacaatttttaccg 22120350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 24623941 - 24624007
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  24623941 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 24624007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 22055035 - 22054966
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||| |||||||||||    
T  22055035 ttactccctccgtttcaaaatacatgtccaagtcaatcacttcacatatgccaatgcataattttgaccg 22054966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 6563488 - 6563422
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||| ||||||| | |||||||    
T  6563488 tactccctccgtttcaaaatatatgtctaagtcaaccacttcacatatgccaatgcatatttttgac 6563422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 19087958 - 19088024
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||| |||||||||    
T  19087958 tactccctccgtttcaaaatacatgtccaagtcaaccgcttcacatatgccaatgcataattttgac 19088024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 21540628 - 21540697
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||| || |||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||    
T  21540628 ttactccttctgtttcaaaatacatgtccaagtcaaccacttcacacatgccaatgcacaattttgaccg 21540697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 32672078 - 32672013
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    |||||| ||||||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||    
T  32672078 tactccttccgtttcaaaatacatgtccaagtcaacaacttcacatatgccaatgcacaattttga 32672013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 1041087 - 1041024
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattt 125  Q
    ||||||| |||||||||||||||  ||| ||||||||||||| |||||||||||||||||||||    
T  1041087 ttactccatccgtttcaaaatacacgtccaagtcaaccactttacatatgtcaatgcacaattt 1041024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 24955395 - 24955462
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||| |||||||||| |||| |||||||| | ||||||||| ||||||||||||||||||    
T  24955395 ttactccctccgcttcaaaatacatgtccaagtcaacaatttcacatatatcaatgcacaattttgac 24955462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 32414679 - 32414745
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||| ||||||||||||||||| |||  ||||||||||||||||||||| ||||||| |||||||||    
T  32414679 tacttcctccgtttcaaaatacatgttcaagtcaaccacttcacatatgccaatgcataattttgac 32414745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 4148193 - 4148128
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    |||| |||| |||||||||||| |||| ||||||||||||||||||||| ||||||| ||||||||    
T  4148193 tacttcctcagtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttga 4148128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 17213792 - 17213860
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||| || ||||||||||||  |||||||||||||| |||||||||| |||||||||||||| ||||    
T  17213792 tactccatctgtttcaaaatacacgtctaagtcaaccatttcacatatgccaatgcacaattttaaccg 17213860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 12226237 - 12226172
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    |||||| ||||||| ||||||| |||| ||||||||||||||||| ||| |||| |||||||||||    
T  12226237 tactccatccgttttaaaatacatgtccaagtcaaccacttcacacatgccaatacacaattttga 12226172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 29694148 - 29694078
Alignment:
Q  60 ttttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgacc 130  Q
    |||||||| ||| |||||||||||| ||||  |||||| |||||||||||||||| |||| || |||||||    
T  29694148 ttttactctctctgtttcaaaatacatgtcgtagtcaatcacttcacatatgtcagtgcataactttgacc 29694078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 28477986 - 28477947
Alignment:
Q  92 agtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  28477986 agtcaatcacttcacatatgtcaatgcacaactttgaccg 28477947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 29790439 - 29790400
Alignment:
Q  92 agtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  29790439 agtcaatcacttcacatatgtcaatgcacaactttgaccg 29790400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 17257651 - 17257717
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||| | |||||||||||||  ||| |||||||||||||||| |||| |||||  ||||||||||    
T  17257651 tactccattcgtttcaaaatacaagtccaagtcaaccacttcacgtatgccaatgttcaattttgac 17257717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 978340 - 978273
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  978340 ttactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 978273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 33387482 - 33387415
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  33387482 ttactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 33387415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 9502627 - 9502693
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  9502627 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 9502693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 14634157 - 14634223
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  14634157 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 14634223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 18094081 - 18094149
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||| |||||||||||||| |||| |||||||||| |||||||||| |||||||||||||||||||    
T  18094081 tactccccccgtttcaaaatacatgtccaagtcaaccatttcacatatgacaatgcacaattttgaccg 18094149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 27109950 - 27109882
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||| ||||||| ||||||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  27109950 tactccatccgttttaaaatacatgttcaagtcaaccacttcacatatgtcaatgcacaattttgaccg 27109882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 12446867 - 12446934
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgacc 130  Q
    |||||||||| ||||||||||  |||| ||||||| ||||||||||||||||||||||||||||||||    
T  12446867 tactccctccatttcaaaatatatgtccaagtcaatcacttcacatatgtcaatgcacaattttgacc 12446934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 11251370 - 11251308
Alignment:
Q  69 ctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||| |||||||| |||| ||||||||||||||||||||| |||||||||||||||||||    
T  11251370 ctccgttgcaaaatacatgtccaagtcaaccacttcacatatgccaatgcacaattttgaccg 11251308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 30354872 - 30354936
Alignment:
Q  65 ctccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||| ||||||||||||||| | | ||||||||| ||||||||||||||||||||||||||||||    
T  30354872 ctccttccgtttcaaaatacatatttaagtcaacaacttcacatatgtcaatgcacaattttgac 30354936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 33587469 - 33587532
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaatttt 126  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||| ||| ||||||||||||||    
T  33587469 tactccctccgttttaaaatacatgtctaagtcaatcacttcacacatgccaatgcacaatttt 33587532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 8086031 - 8086093
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattt 125  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||| |||||    
T  8086031 tactccctccgtttcaaaatacatgttcaagtcaaccacttcacatatgccaatgcataattt 8086093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 40156462 - 40156392
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttca--catatgtcaatgcacaattttgaccg 131  Q
    |||||| || |||||||||||| |||| ||||||||||||| |  ||||||||||||||||||||||||||    
T  40156462 tactccatctgtttcaaaatacatgtccaagtcaaccacttaattcatatgtcaatgcacaattttgaccg 40156392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 7224423 - 7224359
Alignment:
Q  67 ccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||||||| || |||| | ||||| ||||||||||||| |||||||||||||| ||||    
T  7224423 ccctccgtttcaaaacacatgtccaggtcaatcacttcacatatgccaatgcacaatttttaccg 7224359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 34112212 - 34112153
Alignment:
Q  70 tccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||| ||||||| |||  ||||||||||||||||| ||||||||| |||||||||||    
T  34112212 tccgttttaaaatacatgttcaagtcaaccacttcacacatgtcaatgtacaattttgac 34112153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 38916252 - 38916321
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||||||||||||||  ||||  | |||||||||||||| ||| ||||||||||  |||||||    
T  38916252 ttactccctccgtttcaaaatatatgtcgcaatcaaccacttcacacatgccaatgcacaaccttgaccg 38916321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 25889525 - 25889457
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||| ||||||||||||||| |||  ||||||| |  ||||||||||||||| ||||||||| ||||    
T  25889525 tactccatccgtttcaaaatacatgttcaagtcaatctgttcacatatgtcaatacacaattttaaccg 25889457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 11785726 - 11785792
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||| ||| ||||| ||||||| |||| |||| ||||| || | |||||||||||||||||||||||    
T  11785726 tacttccttcgttttaaaatacatgtccaagttaaccattttaaatatgtcaatgcacaattttgac 11785792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 5405258 - 5405192
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  5405258 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 5405192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 7608311 - 7608245
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  7608311 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 7608245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 19141066 - 19141132
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  19141066 tactccctccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcataattttgac 19141132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 44365420 - 44365351
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||| |||||||||||    
T  44365420 ttactccctccgtttcaaaatacatgtccaagtcaatcacttcacatatgccaatgcataattttgaccg 44365351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 8042022 - 8042088
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||  |||| ||||||||||||||||||||||||||| | |||||||||    
T  8042022 tactccctccgtttcaaaatatatgtccaagtcaaccacttcacatatgtcaatgtataattttgac 8042088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 11841592 - 11841661
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||||||||||||||||||||| |||| ||||||| |||||||||||||  |||||| |||||||||||    
T  11841592 ttactccctccgtttcaaaatacatgtccaagtcaatcacttcacatatgctaatgcataattttgaccg 11841661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 33607634 - 33607569
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    |||||| ||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||||||    
T  33607634 tactccatccgtttcaaaatacatgtccaagttaactacttcacatatgtcaatgcacaattttga 33607569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 2182960 - 2183026
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||||||||||||||||||| |||  || ||||| |||||||||||| |||||||||||||||||    
T  2182960 tactccctccgtttcaaaatacatgttcaaatcaacaacttcacatatgccaatgcacaattttgac 2183026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 13125144 - 13125210
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    ||||||| ||||||||||||||| |||| ||||||| ||||||||||||| ||||| ||||||||||    
T  13125144 ttactccatccgtttcaaaatacatgtccaagtcaatcacttcacatatgccaatgtacaattttga 13125210  T

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Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 9172145 - 9172214
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||| |||| ||||||||||| |||| ||||||||||||||||| ||| ||||| |||||||||||||    
T  9172145 ttactcactccatttcaaaatacatgtccaagtcaaccacttcacacatgccaatgtacaattttgaccg 9172214  T

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Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 36072425 - 36072370
Alignment:
Q  74 tttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||||||| |||| ||||||| ||||||||||||| |||||||||||||||||    
T  36072425 tttcaaaatacatgtccaagtcaatcacttcacatatgacaatgcacaattttgac 36072370  T

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Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 36177579 - 36177646
Alignment:
Q  62 ttactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||| ||||||||||||||| ||||  |||||||||||||||| || ||||||||||| ||||||    
T  36177579 ttactccatccgtttcaaaatacatgtcacagtcaaccacttcacacatatcaatgcacaactttgac 36177646  T

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Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 36719333 - 36719392
Alignment:
Q  72 cgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    ||||| ||||||| |||  | |||||||||||||||||||||||||||||||||||||||    
T  36719333 cgttttaaaatacatgttcaggtcaaccacttcacatatgtcaatgcacaattttgaccg 36719392  T

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Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 24093073 - 24093137
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttg 127  Q
    |||||| ||||||||||||||| ||||  |||||||||||||||| |||||||| ||||| ||||    
T  24093073 tactccatccgtttcaaaatacatgtcgtagtcaaccacttcacacatgtcaattcacaactttg 24093137  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 7800109 - 7800041
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||||| ||||||||||| ||||   ||||||||||||||| ||| | |||||||| ||||||||    
T  7800109 tactccctccctttcaaaatacatgtcgttgtcaaccacttcacacatgcctatgcacaactttgaccg 7800041  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 32774854 - 32774786
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||| ||| ||||||||||||| |||| |||||||||| || |||||| ||||||| ||| ||||||||    
T  32774854 tactaccttcgtttcaaaatacatgtccaagtcaaccattttacatatatcaatgcgcaactttgaccg 32774786  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 39358369 - 39358329
Alignment:
Q  91 aagtcaaccacttcacatatgtcaatgcacaattttgaccg 131  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  39358369 aagtcaactacttcacatatgccaatgcacaattttgaccg 39358329  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 129
Target Start/End: Complemental strand, 44645102 - 44645067
Alignment:
Q  94 tcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||||||||||||||||||| ||||||||||||    
T  44645102 tcaaccacttcacatatgtcaatacacaattttgac 44645067  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 6223328 - 6223263
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    ||||| |||||||| |||| || | || || |||||||||| ||||||||||||||| ||||||||    
T  6223328 tactctctccgttttaaaacacatatccaaatcaaccactttacatatgtcaatgcataattttga 6223263  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 33228474 - 33228510
Alignment:
Q  92 agtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    |||||||||||||||| |||||||||||||| |||||    
T  33228474 agtcaaccacttcacacatgtcaatgcacaactttga 33228510  T

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Target: scaffold0056 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 71222 - 71157
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttga 128  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  71222 tactccatccgtttcaaaatacatgtccaagtcaaccacttcacatatgccaatgcacaattttga 71157  T

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Target: scaffold0003 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 161844 - 161903
Alignment:
Q  70 tccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    ||||||||||||||| |||  ||||||||||||| |||||||||||||||||||||||||    
T  161844 tccgtttcaaaatacatgttcaagtcaaccactttacatatgtcaatgcacaattttgac 161903  T

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Target: scaffold0295 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 13717 - 13783
Alignment:
Q  63 tactccctccgtttcaaaatacttgtctaagtcaaccacttcacatatgtcaatgcacaattttgac 129  Q
    |||||| ||||||||||||||| |||  ||||||||||||| ||||||||||||||| |||||||||    
T  13717 tactccatccgtttcaaaatacatgttcaagtcaaccactttacatatgtcaatgcaaaattttgac 13783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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