View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4647_low_39 (Length: 219)
Name: NF4647_low_39
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 40056895 - 40056694
Alignment:
| Q |
1 |
tcctatagttttaaaacttacacttatctccttcgaattctcatgaaatagacaaacacatcccttacttgttaacaccgttgcttttccgttaattttc |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40056895 |
tcctatagtttaaaaacttacacttatctccttcgaattctcatgaaatagacaaacacatcccttacttgttaacaccgttgctttttcgttaattttc |
40056796 |
T |
|
| Q |
101 |
acacatattgatccatcttcttcactcatcatttccttgtcgtagttattactatcctatcgctcatgtcatggttctcaccatcgttcacattgttgat |
200 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40056795 |
acacatattgatccatcttcctcactcatcctttccttgtcgttgttattactatcctatcgctcatgtcatggttctcaccatcgttcacattgttgat |
40056696 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
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|
| T |
40056695 |
tt |
40056694 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 1300052 - 1300096
Alignment:
| Q |
38 |
ttctcatgaaatagacaaacacatcccttacttgttaacaccgtt |
82 |
Q |
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|||| ||||||||||||||||| |||||| ||| ||||||||||| |
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|
| T |
1300052 |
ttctaatgaaatagacaaacacctcccttccttattaacaccgtt |
1300096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 39484388 - 39484578
Alignment:
| Q |
9 |
ttttaaaacttacacttatctccttcgaattctcatgaaatagacaaacacatcccttacttgttaacaccgttgcttttccgttaattttcacacatat |
108 |
Q |
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| T |
39484388 |
ttttaaaacttacacttacctccctcaagttctcatgaaatatataaacacatcccttatttattaacaccgttacttttccgttaattttcacagatat |
39484487 |
T |
|
| Q |
109 |
tgatccatcttcttcactcatcatttccttgtcgtagttattactatcctatcgctcatgtcatggttctcaccatcgttcacattgttgat |
200 |
Q |
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| T |
39484488 |
tgatccatcttcctatctcgtc-tttcctcgtcattgttattactatgctatcgctcatgtcatggctctcaccatcattcacattgttgat |
39484578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 50071335 - 50071391
Alignment:
| Q |
41 |
tcatgaaatagacaaacacatcccttacttgttaacaccgttgcttttccgttaatt |
97 |
Q |
| |
|
|||| ||||| |||||||| |||||||||| ||||||||||| ||||| ||||||| |
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|
| T |
50071335 |
tcatcaaatacacaaacacttcccttacttattaacaccgttagttttcagttaatt |
50071391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 35145621 - 35145742
Alignment:
| Q |
6 |
tagttttaaaacttacacttatctccttcgaattctcatgaaatagacaaacacatcccttacttgttaacaccgttgcttttccgttaattttcacaca |
105 |
Q |
| |
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||||||||||||||||||| | |||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
35145621 |
tagttttaaaacttacactaacctccctcgagttctcataaaatagacaaacacatcccttacttgttaacacagttacttttccgttaattttcacaca |
35145720 |
T |
|
| Q |
106 |
tattgatccatcttcttcactc |
127 |
Q |
| |
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||||||| ||||||| |||||| |
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|
| T |
35145721 |
tattgattcatcttcctcactc |
35145742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 25476116 - 25476028
Alignment:
| Q |
6 |
tagttttaaaacttacacttatctccttcgaattctcatgaaatagacaaacacatcccttacttgttaacaccgttgcttttccgtta |
94 |
Q |
| |
|
|||||||||||||||||| | |||| || | || | |||||||| |||||||| ||||||| | ||||||||||| |||||||||| |
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| T |
25476116 |
tagttttaaaacttacacgaacctccctcaagtttttatgaaataaacaaacacctcccttatctattaacaccgttaattttccgtta |
25476028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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