View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4647_low_4 (Length: 638)

Name: NF4647_low_4
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4647_low_4
NF4647_low_4
[»] chr4 (3 HSPs)
chr4 (88-627)||(53034540-53035076)
chr4 (511-580)||(1016784-1016853)
chr4 (392-438)||(35743366-35743412)
[»] chr7 (4 HSPs)
chr7 (336-438)||(25670513-25670615)
chr7 (407-438)||(9210933-9210964)
chr7 (403-439)||(529684-529720)
chr7 (392-436)||(48157049-48157093)
[»] chr1 (6 HSPs)
chr1 (392-438)||(12564426-12564472)
chr1 (405-447)||(6292602-6292644)
chr1 (216-265)||(11137765-11137814)
chr1 (404-436)||(5591896-5591928)
chr1 (223-298)||(34619479-34619552)
chr1 (407-451)||(41505786-41505830)
[»] chr6 (2 HSPs)
chr6 (344-438)||(33089555-33089649)
chr6 (409-438)||(31776199-31776228)
[»] chr2 (3 HSPs)
chr2 (416-446)||(7937093-7937123)
chr2 (392-438)||(15370250-15370296)
chr2 (407-451)||(30331863-30331907)
[»] chr5 (5 HSPs)
chr5 (408-457)||(36796615-36796664)
chr5 (249-290)||(42849884-42849925)
chr5 (405-433)||(35036912-35036940)
chr5 (407-451)||(39594919-39594963)
chr5 (408-452)||(40426878-40426922)
[»] chr8 (1 HSPs)
chr8 (407-451)||(38602439-38602483)


Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 88 - 627
Target Start/End: Complemental strand, 53035076 - 53034540
Alignment:
Q  88 atttttgtaggttgtggatccggactcagtggtgagacactctctgaggaaggtcatcattggattggtctcgatatttcaccctcaatgcttagtatgc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  53035076 atttttgtaggttgtggatccggactcagtggtgagacactctctgaggaaggtcatcattggattggtctcgacatttcaccctcaatgcttagtatgt 53034977  T
Q  188 tttcattttcccctactgttcgctctctaaggccttgtttggataaacataacttaattttcagcttatggcataagtccttatgtaagagctatttcta 287  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53034976 tttcattttcccctactgttcgctctctaaggccgtttttggataaacataacttaattttcagcttatggcataagtccttatgtaagagctatttcta 53034877  T
Q  288 taactaaagatgaaaatataaattcaattcaatttctttatataagccataagctcaaaacaatttatcaacatgtagtaagttgttttcataactgctc 387  Q
    |||||||||||||||||| ||||| |||| |||| |||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  53034876 taactaaagatgaaaataaaaattaaattaaattgctttatataagccataagctgaaaacaatttatgaacatgtcgtaagttgttttcataactgctc 53034777  T
Q  388 tttgacagtcacacgaatgcttatatcagtagataagctcaaataagtcaaacaaaacaagccccaagtatggaagttgttcctgtctatttttcattgt 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||    
T  53034776 tttgacagtcacacgaatgcttatatcagtagataagctcaaataagtcaaaccaaacaagccccaagtatg---gttgttcctgtctatttttcattgt 53034680  T
Q  488 ttgtaattttattttaaaatttgtaactcgtagacattgcattggagcgagaggttgagggtgatcttttactcagtgacatgggtcaggtattatattt 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53034679 ttgtaattttattttaaaatttgtaactcgtagacattgcattggagcgagaggttgagggtgatcttttactcagtgacatgggtcaggtattatattt 53034580  T
Q  588 acctcatttcacagttctttttgtttttgcttctgttcat 627  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53034579 acctcatttcacagttctttttgtttttgcttctgttcat 53034540  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 511 - 580
Target Start/End: Original strand, 1016784 - 1016853
Alignment:
Q  511 taactcgtagacattgcattggagcgagaggttgagggtgatcttttactcagtgacatgggtcaggtat 580  Q
    ||||| ||||| || |||||||| || ||||||||||| || ||||||||| ||||||||||||||||||    
T  1016784 taacttgtagatatcgcattggaccgtgaggttgagggcgaccttttactcggtgacatgggtcaggtat 1016853  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 438
Target Start/End: Original strand, 35743366 - 35743412
Alignment:
Q  392 acagtcacacgaatgcttatatcagtagataagctcaaataagtcaa 438  Q
    |||||| ||| ||||||||||| ||||||||| ||||||||||||||    
T  35743366 acagtctcacaaatgcttatattagtagataatctcaaataagtcaa 35743412  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 438
Target Start/End: Complemental strand, 25670615 - 25670513
Alignment:
Q  336 ataagctcaaaacaatttatcaacatgtagtaagttgttttcataactgctctttgacagtcacacgaatgcttatatcagtagataagctcaaataagt 435  Q
    ||||||| |||||||||||| |||||||  |||||||||||||||| |  |||   |||||| ||| |  |||||| ||| ||||||||||||| |||||    
T  25670615 ataagctgaaaacaatttattaacatgtcataagttgttttcataagttttctcaaacagtctcacaagagcttatgtcaatagataagctcaagtaagt 25670516  T
Q  436 caa 438  Q
    |||    
T  25670515 caa 25670513  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 438
Target Start/End: Original strand, 9210933 - 9210964
Alignment:
Q  407 cttatatcagtagataagctcaaataagtcaa 438  Q
    ||||||||||||||||||||||||||||||||    
T  9210933 cttatatcagtagataagctcaaataagtcaa 9210964  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 529684 - 529720
Alignment:
Q  403 aatgcttatatcagtagataagctcaaataagtcaaa 439  Q
    ||||||||| | |||||||||||||||||||||||||    
T  529684 aatgcttatcttagtagataagctcaaataagtcaaa 529720  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 436
Target Start/End: Complemental strand, 48157093 - 48157049
Alignment:
Q  392 acagtcacacgaatgcttatatcagtagataagctcaaataagtc 436  Q
    |||||| ||| |||||||| ||||||| |||||||||||||||||    
T  48157093 acagtctcacaaatgcttaaatcagtaaataagctcaaataagtc 48157049  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 438
Target Start/End: Complemental strand, 12564472 - 12564426
Alignment:
Q  392 acagtcacacgaatgcttatatcagtagataagctcaaataagtcaa 438  Q
    |||||||||| | |||||||||||||| |||||||||||||||||||    
T  12564472 acagtcacacaagtgcttatatcagtatataagctcaaataagtcaa 12564426  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 6292602 - 6292644
Alignment:
Q  405 tgcttatatcagtagataagctcaaataagtcaaacaaaacaa 447  Q
    ||||||| |||||||||||||||||||||||||| | ||||||    
T  6292602 tgcttatgtcagtagataagctcaaataagtcaatccaaacaa 6292644  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 11137765 - 11137814
Alignment:
Q  216 aaggccttgtttggataaacataacttaattttcagcttatggcataagt 265  Q
    |||||| |||||||||||| | |||||||||| |||||||| ||||||||    
T  11137765 aaggccctgtttggataaaaaaaacttaatttacagcttatagcataagt 11137814  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 436
Target Start/End: Complemental strand, 5591928 - 5591896
Alignment:
Q  404 atgcttatatcagtagataagctcaaataagtc 436  Q
    ||||||||| |||||||||||||||||||||||    
T  5591928 atgcttataccagtagataagctcaaataagtc 5591896  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 34619552 - 34619479
Alignment:
Q  223 tgtttggataaacataacttaattttcagcttatggcataagtccttatgtaagagctatttctataactaaagat 298  Q
    ||||||||||||||   |||||||| |||||||| |||||| | ||||||||  ||| ||||||||||| ||||||    
T  34619552 tgtttggataaacag--cttaatttgcagcttatagcataattgcttatgtataagccatttctataacaaaagat 34619479  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 41505786 - 41505830
Alignment:
Q  407 cttatatcagtagataagctcaaataagtcaaacaaaacaagccc 451  Q
    ||||| |||||||||||||||||||||| ||| | ||||||||||    
T  41505786 cttatgtcagtagataagctcaaataagccaatccaaacaagccc 41505830  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 344 - 438
Target Start/End: Original strand, 33089555 - 33089649
Alignment:
Q  344 aaaacaatttatcaacatgtagtaagttgttttcataactgctctttgacagtcacacgaatgcttatatcagtagataagctcaaataagtcaa 438  Q
    ||||||| |||| |||||||  |||| ||||||||||| | ||||   | |||| ||| ||| | ||| ||||||||||||||||||||||||||    
T  33089555 aaaacaacttataaacatgtcctaagctgttttcataagttctctgaaatagtctcacaaatacatatgtcagtagataagctcaaataagtcaa 33089649  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 438
Target Start/End: Complemental strand, 31776228 - 31776199
Alignment:
Q  409 tatatcagtagataagctcaaataagtcaa 438  Q
    ||||||||||||||||||||||||||||||    
T  31776228 tatatcagtagataagctcaaataagtcaa 31776199  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 416 - 446
Target Start/End: Original strand, 7937093 - 7937123
Alignment:
Q  416 gtagataagctcaaataagtcaaacaaaaca 446  Q
    |||||||||||||||||||||||||||||||    
T  7937093 gtagataagctcaaataagtcaaacaaaaca 7937123  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 438
Target Start/End: Complemental strand, 15370296 - 15370250
Alignment:
Q  392 acagtcacacgaatgcttatatcagtagataagctcaaataagtcaa 438  Q
    |||||| ||| |||||||||  |||||||||||||||||||||||||    
T  15370296 acagtctcacaaatgcttatgccagtagataagctcaaataagtcaa 15370250  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 30331863 - 30331907
Alignment:
Q  407 cttatatcagtagataagctcaaataagtcaaacaaaacaagccc 451  Q
    ||||| |||||||||||||| ||||||||||| | ||||||||||    
T  30331863 cttatgtcagtagataagctgaaataagtcaatccaaacaagccc 30331907  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 36796664 - 36796615
Alignment:
Q  408 ttatatcagtagataagctcaaataagtcaaacaaaacaagccccaagta 457  Q
    |||| ||| |||||||||||||||||||||| | ||||||||| ||||||    
T  36796664 ttatgtcattagataagctcaaataagtcaatccaaacaagcctcaagta 36796615  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 42849884 - 42849925
Alignment:
Q  249 cagcttatggcataagtccttatgtaagagctatttctataa 290  Q
    ||||||||||||||||| ||||||||  ||||||||||||||    
T  42849884 cagcttatggcataagtgcttatgtataagctatttctataa 42849925  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 433
Target Start/End: Complemental strand, 35036940 - 35036912
Alignment:
Q  405 tgcttatatcagtagataagctcaaataa 433  Q
    |||||||||||||||||||||||||||||    
T  35036940 tgcttatatcagtagataagctcaaataa 35036912  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 39594919 - 39594963
Alignment:
Q  407 cttatatcagtagataagctcaaataagtcaaacaaaacaagccc 451  Q
    ||||| || ||||||||||||||||||||||| | ||||||||||    
T  39594919 cttatgtcggtagataagctcaaataagtcaatccaaacaagccc 39594963  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 452
Target Start/End: Original strand, 40426878 - 40426922
Alignment:
Q  408 ttatatcagtagataagctcaaataagtcaaacaaaacaagcccc 452  Q
    |||| ||| |||||||||||||||||||||| ||||||| |||||    
T  40426878 ttatgtcattagataagctcaaataagtcaaccaaaacaggcccc 40426922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 38602439 - 38602483
Alignment:
Q  407 cttatatcagtagataagctcaaataagtcaaacaaaacaagccc 451  Q
    ||||| |||||||||||||||||||||||||| | ||||| ||||    
T  38602439 cttatgtcagtagataagctcaaataagtcaatccaaacaggccc 38602483  T

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