View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4647_low_5 (Length: 544)
Name: NF4647_low_5
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 48570821 - 48570471
Alignment:
| Q |
19 |
gttttgattttcatccattggtacgtgtttgccagcttttaatagcattcctgttgtgattttaattttgacagtttgcagctccagagttctctaaaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48570821 |
gttttgattttcatccattggtacgtgtttgccagcttttaatagcattcctgttgtgattttaattttgacagtttgcagctccagagttctctaaaaa |
48570722 |
T |
|
| Q |
119 |
tcagaaagatattaacttggtttgtgtttgtgc----------atatatatatttggtaacttaggcctcgtgtctttttgtcttagactatttatgtct |
208 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48570721 |
tcagaaaaatattaacttggtttgtgtttgtgcgtatatatatatatatatatttggtaacttaggcctcgtgtctttttgtcttagactatttatgtct |
48570622 |
T |
|
| Q |
209 |
ttcgtttgtatgacatttgctctctagggcttttctttgaaccaaaacttgatttttatcagagcctcttacttgtggtgattctaccttgatcttatca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48570621 |
ttcgtttgtatgacatttgctctctagggcttttctttgaaccaaaacttgatttttatcagagcctcttacttgtggtgattctaccttgatcttatca |
48570522 |
T |
|
| Q |
309 |
ttccgttatggattatggccatttctaccatttccttccgagtacttcacc |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48570521 |
ttccgttatggattatggccatttctaccatttccttccgagtacttcacc |
48570471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 394 - 529
Target Start/End: Complemental strand, 48570436 - 48570301
Alignment:
| Q |
394 |
gctactttgttggaataaatcgatatcattaagttagattcttcgactcatatggaagcacttaaatcgatatcatgtgatattcacagcctatcaccac |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48570436 |
gctactttgttggaataaatcgatatcattaagttagattcttcgactcatatggaagcacttaaatcgatatcatgtgatattcacagcctctcaccac |
48570337 |
T |
|
| Q |
494 |
aagtgataatgtttgctattaattttgtttttatat |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
48570336 |
aagtgataatgtttgctattaattttgtttttatat |
48570301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 47051117 - 47051043
Alignment:
| Q |
57 |
ttaatagcattcctgttgtgattttaattttgacagtttgcagctccagagttctctaaaaatcagaaagatatta |
132 |
Q |
| |
|
|||||| ||||| |||| || ||||||| |||||||||| |||||||||||||| | ||||||| |||||||||| |
|
|
| T |
47051117 |
ttaatatcattcatgttctg-ttttaatgttgacagtttttagctccagagttctttgaaaatcaaaaagatatta |
47051043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University