View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4647_low_6 (Length: 505)
Name: NF4647_low_6
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 495
Target Start/End: Original strand, 2325789 - 2326264
Alignment:
| Q |
19 |
caatcaattatagttcagctttgttccatttaacagatggtaatacatgtctcaccacctttcgcgcacacactatatatccatccatagttattattaa |
118 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
2325789 |
caatcaattatagtgcaactttgttccatttaagagggggtaatacatgtctcaccacctttcgcgcacacactatat--ccatccatacttattattaa |
2325886 |
T |
|
| Q |
119 |
-tcatatcccctagttctcatcatccatcctttggtttatacacacactatcacgtaaaaagagtaaatcatttgaataaaacttttacgtgatggtaac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2325887 |
atcatatcccctagttctcatcatccatcctttggtttatacacacactatcacgtaaaaagagtaaatcatttgaataaaacttttacgtgatggaaac |
2325986 |
T |
|
| Q |
218 |
atggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcccaccacac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2325987 |
atggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcccaccacac |
2326086 |
T |
|
| Q |
318 |
atccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatc |
417 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326087 |
atccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatc |
2326186 |
T |
|
| Q |
418 |
ttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctc |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
2326187 |
ttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaattcatctc |
2326264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 210 - 487
Target Start/End: Original strand, 2320125 - 2320402
Alignment:
| Q |
210 |
atggtaacatggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcc |
309 |
Q |
| |
|
|||| ||||||||||||||||||| |||| || |||||||||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||| ||| |
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|
| T |
2320125 |
atggaaacatggttcatcgtcctcgttacgctatgcatcatcttccttatcagagccatcctctccttcttcacaaccaccgtacccctccctcccggcc |
2320224 |
T |
|
| Q |
310 |
caccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctat |
409 |
Q |
| |
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| | ||||||||||||||||| || | | |||| ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2320225 |
ctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctat |
2320324 |
T |
|
| Q |
410 |
catcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
487 |
Q |
| |
|
||||| | | ||||||| || |||||||||||| |||| ||||| ||||||||| ||||| | |||||||||||| |
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|
| T |
2320325 |
catcactgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa |
2320402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 197 - 487
Target Start/End: Original strand, 2302411 - 2302701
Alignment:
| Q |
197 |
aaacttttacgtgatggtaacatggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagccattctctcctccttcacaaccaccgtaccc |
296 |
Q |
| |
|
|||||||||| |||| |||||||||||| |||||||||||||| ||||||||||||||| || || |||||| ||||||||||||||||||||||| |
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|
| T |
2302411 |
aaacttttacacaatggaaacatggttcattgtcctcattactctctgcatcatcttcctcatcggagtcattcttgcctccttcacaaccaccgtaccc |
2302510 |
T |
|
| Q |
297 |
ctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgcca |
396 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||| || ||| || | |||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
2302511 |
ttccctcctggccctccacacatccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgcca |
2302610 |
T |
|
| Q |
397 |
aacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
487 |
Q |
| |
|
|||||||||||||||||| ||| | ||||| || |||||||||||| |||| |||| ||||||||||||||| | |||||||||||| |
|
|
| T |
2302611 |
aacatggtcctatcatcactctccacatcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgttcaaaa |
2302701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 217 - 493
Target Start/End: Original strand, 2292812 - 2293088
Alignment:
| Q |
217 |
catggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcccaccaca |
316 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||| ||| |||||| ||||||| |||||||||||| |||||||||||||| |||| | ||| |
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|
| T |
2292812 |
catggttcattgtcctcgttactctttgcatcatcttccttatcagagccatcctctccttattcacaaccaccatacccctccctcccggccctctaca |
2292911 |
T |
|
| Q |
317 |
catccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaat |
416 |
Q |
| |
|
|||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2292912 |
catccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcact |
2293011 |
T |
|
| Q |
417 |
cttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatc |
493 |
Q |
| |
|
| ||||||| || |||||||||||| ||| ||||| | ||||||||||||| | |||||||||||| ||||| |
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|
| T |
2293012 |
gtccatatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatc |
2293088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 215 - 487
Target Start/End: Original strand, 2309141 - 2309413
Alignment:
| Q |
215 |
aacatggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcccacca |
314 |
Q |
| |
|
|||||||||||| |||||| ||||||| |||||||||||||| ||| |||||| ||||||| |||||||||||| ||||||||||||||| |||| | | |
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|
| T |
2309141 |
aacatggttcatagtcctcgttactctctgcatcatcttccttatcagagccatgctctccttcttcacaaccactgtacccctccctcccggccctcta |
2309240 |
T |
|
| Q |
315 |
cacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatca |
414 |
Q |
| |
|
|||||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2309241 |
cacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatca |
2309340 |
T |
|
| Q |
415 |
atcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
487 |
Q |
| |
|
| | ||||||| || ||||||||||| |||| ||||| ||||||||| ||||| | |||||||||||| |
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|
| T |
2309341 |
ttgtccatatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa |
2309413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 284 - 487
Target Start/End: Original strand, 2329768 - 2329971
Alignment:
| Q |
284 |
aaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaa |
383 |
Q |
| |
|
|||||||| | ||||||| || | |||||||| || || ||||||| |||||| |||||||| ||||||||||| |||| |||||||||||||||| | |
|
|
| T |
2329768 |
aaccaccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcaga |
2329867 |
T |
|
| Q |
384 |
actctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttc |
483 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2329868 |
actcttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttc |
2329967 |
T |
|
| Q |
484 |
aaaa |
487 |
Q |
| |
|
|||| |
|
|
| T |
2329968 |
aaaa |
2329971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 284 - 487
Target Start/End: Original strand, 2350068 - 2350271
Alignment:
| Q |
284 |
aaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaa |
383 |
Q |
| |
|
|||||||| | ||||||||||| | ||||| || |||||||| |||| ||| || | ||||||||||||||||| |||||||| ||||||||| ||||| |
|
|
| T |
2350068 |
aaccaccgcaaccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaa |
2350167 |
T |
|
| Q |
384 |
actctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttc |
483 |
Q |
| |
|
|| ||||| ||||| ||||||||||||||| ||| || ||| | | | |||||||||||| ||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
2350168 |
accctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttc |
2350267 |
T |
|
| Q |
484 |
aaaa |
487 |
Q |
| |
|
|||| |
|
|
| T |
2350268 |
aaaa |
2350271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 2329642 - 2329739
Alignment:
| Q |
171 |
cgtaaaaagagtaaatcatttgaataaa-acttttacgtgatggtaacatggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagcca |
267 |
Q |
| |
|
||||||||||||||| | ||| || || |||||||||| |||| |||||||||||||| || || |||| ||||||||||||||| ||| ||||| |
|
|
| T |
2329642 |
cgtaaaaagagtaaagtagttgcatcaacacttttacgtaatggaaacatggttcatcgcacttgtttctctctgcatcatcttcctcatcagagcca |
2329739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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