View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_low_8 (Length: 487)
Name: NF4647_low_8
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 21 - 484
Target Start/End: Complemental strand, 15990191 - 15989728
Alignment:
| Q |
21 |
atagcttcaattcctgtcatgacttctgctggcaaaggtcgttcggttgttgtaaaagcatctatgtcttcttttagttggtccacagaagttgcaccga |
120 |
Q |
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| T |
15990191 |
atagcttcaattcctgtcatgacttctgctggcaaaggtcgttcggttgttgtaaaagcatctatgtcttcttttagttggtccacagaagttgcaccga |
15990092 |
T |
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| Q |
121 |
taattgaactcgtcatgaatggacgatctctcacaaatccaagcgcgagctggacaggagttagaccatgtttctcggccaactcaagatacttaatagt |
220 |
Q |
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| T |
15990091 |
taattgaactcgtcatgaatggacgatctctcacaaatccaagcgcgagctggacaggagttagaccatgtttctcggccaactcaatatacttaatagt |
15989992 |
T |
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| Q |
221 |
tgcttcctgaaatacaaacatgaaaaaatagaagaaagttattaattggttatcttgttaaccgtggtttagagtatagtctgaaccaatgttataaaaa |
320 |
Q |
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| T |
15989991 |
tgcttcctgaaataaaaacatgaaaaaatagaagaaagttattaattggttatcttgttaaccgtggtttagagtatagtctgaaccaatgttataaaaa |
15989892 |
T |
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| Q |
321 |
ctgaactggatggttcagttatttgagcagttcaattgtggttttgtccgagtggtttaaagtcacttaacctgacccagaagtcatgctggtacgatgt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15989891 |
ctgaactggatggttcagttatttgagcagttcaattgtggttttgtccgagtggtttaaagtcacttaacctgacccagaagtcatgctggtacgatgt |
15989792 |
T |
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| Q |
421 |
ctaattcggttttgnnnnnnncggtcaaaactttaaatacaagaactagaagtattatctaccc |
484 |
Q |
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| T |
15989791 |
ctaattcggttttgaaaaaaacggtcaaaactttaaatacaagaactagaagtattatgtaccc |
15989728 |
T |
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