View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4647_low_9 (Length: 487)
Name: NF4647_low_9
Description: NF4647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4647_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 11 - 469
Target Start/End: Complemental strand, 36753105 - 36752647
Alignment:
| Q |
11 |
cagagaaggagattccgtagaatttgacgctgcgtccggtttagcatctttatcttcccatttgagaggtttactgagcgaagaagaaggatgataattg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36753105 |
cagagaaggagattccgtagaatttgacgctgcgtccgatttagcatctttatcttcccatttgagaggtttactgagcgaagaagaaggatgataattg |
36753006 |
T |
|
| Q |
111 |
attaaaccccaagcttcaagaaaatcaaagactcttcgaatggaaccaacgtcactgactatgattttgcgaacatctgtgaatgtgatttttctgttgg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36753005 |
attaaaccccaagcttcaagaaaatcaaagactcttcgaatggaaccaacgtcaccgactatgattttgcgaacatctgtgaatgtgatttttctgttgg |
36752906 |
T |
|
| Q |
211 |
gattgaatctgaaaaacttgacgatagagtttctgtagtatttgtaaaccctagggttcttggaagattcgggaatgttacggatttcgcattcgtgaat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36752905 |
gattgaatctgaaaaacttgacgatagagtttctgtagtatttgtaaaccctagggttcttggaagattcgggaatgttacggatttcgcattcgtgaat |
36752806 |
T |
|
| Q |
311 |
ggaatcccatgagaaccatcttgagtggctagggacaaggattaagttggcgtcgctcgaggttatgggttgcggtgtttcaatggcggaagacggaggc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36752805 |
ggaatcccatgagaaccatcttgagtggctagggacaaggattaagttggcgtcgctcgaggttatgggttgcggtgtttcgatggcggaagacggaggc |
36752706 |
T |
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| Q |
411 |
tcgacggttatatttggcgttgaggacgccattcgtttaccacttggcgatggttgaac |
469 |
Q |
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| T |
36752705 |
tcgacggttatatttggcgttgaggacgccattcctttaccacttggcgatggttgaac |
36752647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 54293553 - 54293914
Alignment:
| Q |
13 |
gagaaggagattccgtagaatttgacgctgcgtccggtttagcatctttatcttcccatttgagaggtttactgagcgaagaagaaggatgataattgat |
112 |
Q |
| |
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||||||||||||| | ||||| || |||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54293553 |
gagaaggagattctgcggaattcgatgctgcgtcgggtttggtgtctttatcttcccatttgagaggtttactgagcgaagaagaaggatgataattgat |
54293652 |
T |
|
| Q |
113 |
taaaccccaagcttcaagaaaatcaaagactcttcgaatggaaccaacgtcactgactatgattttgcgaacatctgtgaatgtgatttttctgttggga |
212 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||||||||| ||||| |||||||| ||||| ||| |
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| T |
54293653 |
taaaccccaagcttcaagaaaatcaaacactcttcgaatggaaccaacgtcaccgactagggttttgcgaacatcggtgaaggtgattttcctgttagga |
54293752 |
T |
|
| Q |
213 |
ttgaatctgaaaaacttgacgatagagtttctgtagtatttgtaaaccctagggttcttggaagattcgggaatgttacggatttcgcattcgtgaatgg |
312 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54293753 |
ttgaatctgaaaaacttgacaatagagtttctgtagtatttgtaaaccctagggttcttggaagattcgggaatgttgcggatttcgcattcgtgaatgg |
54293852 |
T |
|
| Q |
313 |
aatcccatgagaaccatcttgagtggctagggacaaggattaagttggcgtcgctcgaggtt |
374 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54293853 |
aatcccacgagaaccatcttgagtggctagggacaaggattaagttggcgtcgctagaggtt |
54293914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 394 - 456
Target Start/End: Original strand, 54294012 - 54294074
Alignment:
| Q |
394 |
tggcggaagacggaggctcgacggttatatttggcgttgaggacgccattcgtttaccacttg |
456 |
Q |
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|||||||||||||||||||||||||| | ||||| ||||||| |||||||||||||||||||| |
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| T |
54294012 |
tggcggaagacggaggctcgacggttctgtttggggttgaggtcgccattcgtttaccacttg |
54294074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 80 - 448
Target Start/End: Complemental strand, 19123400 - 19123032
Alignment:
| Q |
80 |
tttactgagcgaagaagaaggatgataattgattaaaccccaagcttcaagaaaatcaaagactcttcgaatggaaccaacgtcactgactatgattttg |
179 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||| |
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| T |
19123400 |
tttactgagagaagaagaaggatgataattgattaaaccccaatcttcaagaaaatcaaagactcttcgaatggaaccaacatcaccgactagggttttg |
19123301 |
T |
|
| Q |
180 |
cgaacatctgtgaatgtgatttttctgttgggattgaatctgaaaaacttgacgatagagtttctgtagtatttgtaaaccctagggttcttggaagatt |
279 |
Q |
| |
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|||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19123300 |
cgaacatcggtgaaggtgatttttctgttagggttgaatctgaaaaacttgacgatagagtttctgtagtatttgtaaaccctagggttcttagaagatt |
19123201 |
T |
|
| Q |
280 |
cgggaatgttacggatttcgcattcgtgaatggaatcccatgagaaccatcttgagtggctagggacaaggattaagttggcgtcgctcgaggttatggg |
379 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||| |||| |
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| T |
19123200 |
cgggaatgttacggatttcacattcgtgaatggaatcccatgagaaccatcttgagtggctagggacaaggatcaagttgccgtcgctagaggttttggg |
19123101 |
T |
|
| Q |
380 |
tt---gcggtgtttcaatggcggaagacggaggctcgacggttatatttggcgttgaggacgccattcgttt |
448 |
Q |
| |
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|| |||||||||| | ||||||||||| |||||||||| | ||||||||||||| |||||| |||| |
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| T |
19123100 |
tttcggcggtgtttc---cgtggaagacggagactcgacggttctgtttggcgttgaggttgccatttgttt |
19123032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 19123439 - 19123407
Alignment:
| Q |
11 |
cagagaaggagattccgtagaatttgacgctgc |
43 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
19123439 |
cagagaaggagattccgtagaatttgacgctgc |
19123407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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