View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4648-Insertion-1 (Length: 1039)
Name: NF4648-Insertion-1
Description: NF4648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4648-Insertion-1 |
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| [»] scaffold0154 (5 HSPs) |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 767; Significance: 0; HSPs: 5)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 767; E-Value: 0
Query Start/End: Original strand, 8 - 963
Target Start/End: Complemental strand, 23314 - 22357
Alignment:
| Q |
8 |
catatgacactgttaaaaattgtcggtcaaatttttcaactgagatcagttattggcaaaatcgatttataattctaccaataatatatttaaagtaaca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23314 |
catatgacactgttaaaaattgtcggtcaaatttttcaactgagattagttattggcaaaatcgatttataattctaccaataatatatttaaagta-ca |
23216 |
T |
|
| Q |
108 |
atgttttatggtttgtactttatactaagagatgggatgttttacgagtctaatgtgtgaacat-atcattcaacacatgattgcttgatggcacnnnnn |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23215 |
atgttttatggtttgtactttatactaagagatgagaagttttacgagtctaatgtgtgaacatgatcattcaacacatgattgcttgatggcacaaaaa |
23116 |
T |
|
| Q |
207 |
nnnnnnnnntgaggtttattaacttttctgttggttaatttggtgtcaaatattcaaagcttattctttttgcattaactctttgttgacaaatattttg |
306 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
23115 |
agaaaaag-tgaggtttattaacttttctgtaggttaatttggtgtcaaatatccaaag----tgctttttgcattaactctttgttgacaaatattttg |
23021 |
T |
|
| Q |
307 |
tcaatgggtaaaaag-------------atcacttggtttaggttgacattccttcctttttccttttaattatggacattccattgacagctttggtaa |
393 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23020 |
tcaatgggtaaaaagctagtaaaaatgaatcacttggtttaggttgacattccttcctttttccttttaattatggacattccattgacagcgttggtaa |
22921 |
T |
|
| Q |
394 |
ctattttcaaatttcaagtgtgaatgtgtaaagtcattgggagcatttgggccttcacggtgttaggtgccagctagaaaaaactctttcaacaattttg |
493 |
Q |
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| T |
22920 |
ctattttcaaatttcaagtgtgaatgtgtaaagtcattgggagcatttgggcattcacggtgttaggtgccagctagaaaaaactctttcaacaattttg |
22821 |
T |
|
| Q |
494 |
gaacaaggaattttttgattttatatgaaaaataaaataatagaaaacctagtgaggaattgtacttgaaatatcgtgtgaaaagaatcatgaacaattc |
593 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22820 |
gaacaaggaattttttgtttttatatgaaaaataaaataatagaaaacctagtgaggaattgtacttgaaatttcgtgtgaaaagaatcatgaacaattc |
22721 |
T |
|
| Q |
594 |
gtaatggagcaccatttaaatatgttctaggatcttatgaagatggaaagaaaagaatcgactattaccaaactcactcacacaaatgaaatcattgtgg |
693 |
Q |
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| T |
22720 |
gtaatggagcaccatttaaatatgttctaggatcttatgaagatggaaagaaaagaatcgactattaccaaactcactcacac------aatcattgtgg |
22627 |
T |
|
| Q |
694 |
aattttggcaacgtaagagtgagatcaaagtattctagagtttattcacttgggaaaggcataggtataagattactataacaagatttaaattaagagg |
793 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22626 |
aattttggcaacgtaagagtgagatcaaagtattctagagtttattcacttgggaaaggcataggtataagattactataacaagatttaaattaagagg |
22527 |
T |
|
| Q |
794 |
ggaaaccgcgtttggtatgaattatacaaagcatgagaaaagaaaagatggtgtaggtgcagaaatatcttcattccattctattagaaaaatatttata |
893 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22526 |
ggaaaccgcgtttggtatgaattatacaaagcatgagaaaagaaaagatggtgtaggtgcagaaatatcttcattccagtctattagaaaaatatttata |
22427 |
T |
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| Q |
894 |
ttgtcttgtaaatttaatttagttggtataagtattgcatattatatgtagaggttggatttagaatcct |
963 |
Q |
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| T |
22426 |
ctgtcttgtgaatttaatttagttggtatgagtattgcatattatatgtagaggttggatttagaatcct |
22357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 216 - 500
Target Start/End: Complemental strand, 13287 - 12993
Alignment:
| Q |
216 |
tgaggtttattaacttttctgttggttaatttggtgtcaaatattcaaagcttattctttttgcattaactctttgttgacaaatattttgtcaat-ggg |
314 |
Q |
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| T |
13287 |
tgaggtttatgaacttttctgttggttaattgactgtcaaatatgcaaagcttattctttttgcatcaactctttgttgtcaaata-tttgtcgatgggg |
13189 |
T |
|
| Q |
315 |
taaaaagat----------cacttggttta-ggttgacattccttcctttttccttttaattatggacattccattgacagctttggtaactattttcaa |
403 |
Q |
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||||||| | || ||||| ||||||||| ||| ||||||||||||||||||| ||||| |||||||| ||||| || |||||||| |
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| T |
13188 |
taaaaagttagtaaaaatgaaccacgtttagggttgacataactt--tttttccttttaattatgg--attcctttgacagcattggttacaattttcaa |
13093 |
T |
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| Q |
404 |
atttc--aagtgtgaatgtgtaaagtcattgggagcatttgggccttcacggtgttaggtgccagcta-gaaaaaactctttcaacaattttggaacaag |
500 |
Q |
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| T |
13092 |
atttcaaaagtgtgaaagtgtaaagttattggcagcacctgagccttgacggtgttatgtgccagctaggaaacagctctttcaacagtttgggaacaag |
12993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 633 - 732
Target Start/End: Complemental strand, 12839 - 12745
Alignment:
| Q |
633 |
aagatggaaagaaaagaatcgactattaccaaactcactcacacaaatgaaatcattgtggaattttggcaacgtaagagtgagatcaaagtattctaga |
732 |
Q |
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| T |
12839 |
aagatggaaagaaaagaatcgaccattaccaaactcactcaaacaaag-----cattgtggaattttggcaacgtaggagtgagatcaaagtattctaga |
12745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 551 - 608
Target Start/End: Complemental strand, 12951 - 12894
Alignment:
| Q |
551 |
aattgtacttgaaatatcgtgtgaaaagaatcatgaacaattcgtaatggagcaccat |
608 |
Q |
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||||||||| |||| ||||||||||||||||||||||||| | ||||||| |||||| |
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| T |
12951 |
aattgtactagaaaattcgtgtgaaaagaatcatgaacaatacctaatggaacaccat |
12894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 13619 - 13547
Alignment:
| Q |
87 |
aataatatatttaaagtaacaatgttttatggtttgtactttatactaagagatgggatgttttacgagtctaatgt |
163 |
Q |
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|||||||| ||||| |||||||||||||| || | ||||||||||||||||| || |||||||||||||||||| |
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| T |
13619 |
aataatatgcttaaaataacaatgttttat-gtctatactttatactaagaga---gaagttttacgagtctaatgt |
13547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 2013 - 2102
Alignment:
| Q |
231 |
tttctgttggttaatttggtgtcaaatattcaaagcttattctttttgcattaactctttgttgacaaatattttgtcaatgggtaaaaa |
320 |
Q |
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| T |
2013 |
tttctgttggttaattcagtgtcaaatatccaaagtttattcttctggctttaactcttcgttgacatatatttagtcaatgggtaaaaa |
2102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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