View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4648-Insertion-14 (Length: 240)
Name: NF4648-Insertion-14
Description: NF4648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4648-Insertion-14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 47731184 - 47730952
Alignment:
| Q |
8 |
gttctcttggtttcatagagtcccttactccctgcattgacattcatgatatgttgctgtcggttaaagatgttttctcttctggcagcccccatgctca |
107 |
Q |
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| T |
47731184 |
gttctcttcgtttcatagagtcccttgctccctgcattgacattcatgatatgttgctgtcagttaaagatgtattctcttctggcagcccccatgctca |
47731085 |
T |
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| Q |
108 |
catcctttacactcagcttccctcatttgccatagatctcataaataatatgcaactcaatttcaatgcttctgtagaggacgcattcatatggactcat |
207 |
Q |
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| T |
47731084 |
cattctttacactcagcttccctcatttgccatagacctcataaataatatgcaactcaatttcaatgcttctgcagagaacgcattcatatggactcat |
47730985 |
T |
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| Q |
208 |
aacaaaaattgcatctacactgctaacagtgga |
240 |
Q |
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| T |
47730984 |
aacaaaaattgcatctacactgctaatagtgga |
47730952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 216
Target Start/End: Complemental strand, 26334871 - 26334726
Alignment:
| Q |
71 |
ttaaagatgttttctcttctggcagcccccatgctcacatcctttacactcagcttccctcatttgccatagatctcataaataatatgcaactcaattt |
170 |
Q |
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| T |
26334871 |
ttaaagatgttttctcttttaacggcctccatgcacaaattctttacattcagctaccttcatttgtcatagacctcataaataatatgcaacacaggtt |
26334772 |
T |
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| Q |
171 |
caatgcttctgtagaggacgcattcatatggactcataacaaaaat |
216 |
Q |
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| T |
26334771 |
caatgcttctctagaggatgtattcatatcgactcataacaaaaat |
26334726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 24873159 - 24873327
Alignment:
| Q |
7 |
agttctcttggtttcatagagtcccttactccctgcattgacattcatgatatgttgctgtcggttaaagatgttttctcttctggcagcccccatgctc |
106 |
Q |
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| T |
24873159 |
agttctcttggtttcatagggtcccttgcaccctacattgacattcatgatttacaattgtcagttaaagatgtattctcttctgccagcccc-atgcac |
24873257 |
T |
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| Q |
107 |
acatcctttacactcagcttccctcatttgccatagatctcataaataatatgcaactcaatttcaatgc |
176 |
Q |
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| T |
24873258 |
acatcctttacactcaactgccttctttcaccatagacctcatcaataatatgcaattcaatttcaatgc |
24873327 |
T |
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