View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4648-Insertion-2 (Length: 1025)

Name: NF4648-Insertion-2
Description: NF4648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4648-Insertion-2
NF4648-Insertion-2
[»] chr3 (3 HSPs)
chr3 (613-1012)||(32702633-32703032)
chr3 (7-446)||(32702024-32702482)
chr3 (505-577)||(32702541-32702610)
[»] chr4 (1 HSPs)
chr4 (756-1012)||(35533368-35533625)


Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 613 - 1012
Target Start/End: Original strand, 32702633 - 32703032
Alignment:
Q  613 agggagcctaccattgttttgtctaaatagtacccactacaattttgtgaattaggtgttattcaactatttaaaatgaataaagtgatattgtttnnnn 712  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  32702633 agggagcctaccattgttttgtctaaatagtacccactccaattttgtgaattaggtgttattcaactatttaaaatgaataaagtgatattgtttaaaa 32702732  T
Q  713 nnnnnctttctctttgctcatattgcgccaatattgttgagtggattctctactgagatttttcgtaaagtttcactcttttttcttttgccttcatttg 812  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32702733 aaaaactttctctttgctcatattgcgccaatattgttgagtggattctctactgagatttttcgtaaagtttcactcttttttcttttgccttcatttg 32702832  T
Q  813 tttagaaaaacaaaacgaaatcaaaatgcctgaggttaggatcattgccaagaatttcatggacatggtggcttcaatgcctgccatcaaacttgataaa 912  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32702833 tttagtaaaacaaaacgaaatcaaaatgcctgaggttaggatcattgccaagaatttcatggacatggtggcttcaatgcctgccatcaaacttgataaa 32702932  T
Q  913 ctctaccagaatggattcatctgcgaagctattctcaggttattactctcttttctcctatttctcaatgcctaccattaaggtcatgtttcgataaaca 1012  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32702933 ctctaccagaatggattcatctgcgaagctattctcaggttattactctcttttctcctatttctcaatgcctaccattaaggtcatgtttcgataaaca 32703032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 446
Target Start/End: Original strand, 32702024 - 32702482
Alignment:
Q  7 agtaattaatttcttgcacaggaggaacaaaagtaaaagagataatctctcaccatccactacaatcttgttaataaggtgaatttctcaacttaagctt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32702024 agtaattaatttcttgcacaggaggaacaaaagtaaaagagataatctctcaccatccactacaatcttgttaataaggtgaatttctcaacttaagctt 32702123  T
Q  107 caattttagtaacaggaaactcatatgcgcaaaagaatagagctcaattggtcccttttagtggtgctaatttttggcgttgaaattgatattgtaagta 206  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32702124 caattttagtaacag-aaactcatatgcgcaagagaatagagcttaattggtcccttttagtggtgctaatttttggctttgaaattgatattgtaagta 32702222  T
Q  207 ggttgagttttt----------------------gttgtgaaaaagggattgcaataagaactttactcatcggttagtttagaattatgaaaaatacga 284  Q
    ||||||||||||                      ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32702223 ggttgagttttttttttttttttttttttttgttgttgtgaaaaagggg--gcaataagaactttactcatcggttagtttagaattatgaaaaatacga 32702320  T
Q  285 aaatagagtaggagcaatcattgttgttcatgggtaaaaaggaaataaaaagtgagagtagcgtttgaaatggaaaagaaagatcgcggaggggactttc 384  Q
    | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32702321 agatagagtaggagcaatcattgttgttcatgggtgaaaaggaaataaaaagtgagagtagcgtttgaaatggaaaagaaagatcgcggaggggactttc 32702420  T
Q  385 gtcatgtatgtttgtttgatttggaaactagattgttatggtttcgataactgaaggtgtac 446  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32702421 gtcatgtatgtttgtttgttttggaaactagattgttatggtttcgataactgaaggtgtac 32702482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 505 - 577
Target Start/End: Original strand, 32702541 - 32702610
Alignment:
Q  505 ggcgggggagccaattatgattattacatgcagcagggagcctggttaaggcggggagcctatttttgattta 577  Q
    |||||||||||||||||||||||||||||   |||||||||||| ||||||| ||||||||| ||| ||||||    
T  32702541 ggcgggggagccaattatgattattacat---gcagggagcctgcttaaggctgggagcctactttggattta 32702610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 756 - 1012
Target Start/End: Complemental strand, 35533625 - 35533368
Alignment:
Q  756 gattctctactgagatttttcgtaaagtttcactctttttt-cttttgccttcatttgtttagaaaaacaaaacgaaatcaaaatgcctgaggttaggat 854  Q
    ||||||||| ||| ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  35533625 gattctctagtgaaattcttcgttaagtttcactctttttttctttttccttcatttgtttagaaaagcaaaacgaaatctaaatgcctgaggttaggat 35533526  T
Q  855 cattgccaagaatttcatggacatggtggcttcaatgcctgccatcaaacttgataaactctaccagaatggattcatctgcgaagctattctcaggtta 954  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35533525 cattgccaagaatttcatggacatggtggcttcaatgcctaccatcaaacttgataaactctacgagaatggattcatctgcgaagctattctcaggtta 35533426  T
Q  955 ttactctcttttctcctatttctcaatgcctaccattaaggtcatgtttcgataaaca 1012  Q
    ||| |||||||| || ||||||||||||||||||||||||| |||||||| |||||||    
T  35533425 ttattctcttttttcgtatttctcaatgcctaccattaaggccatgtttccataaaca 35533368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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