View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4648-Insertion-3 (Length: 971)

Name: NF4648-Insertion-3
Description: NF4648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4648-Insertion-3
NF4648-Insertion-3
[»] chr2 (7 HSPs)
chr2 (200-971)||(12799077-12799848)
chr2 (60-134)||(29108797-29108871)
chr2 (60-134)||(35470332-35470406)
chr2 (8-46)||(12798861-12798899)
chr2 (90-134)||(12798966-12799010)
chr2 (60-134)||(15658769-15658843)
chr2 (93-134)||(32143615-32143656)
[»] chr5 (6 HSPs)
chr5 (60-134)||(29144394-29144467)
chr5 (87-134)||(24181449-24181496)
chr5 (87-134)||(26296455-26296502)
chr5 (87-134)||(22732006-22732053)
chr5 (88-134)||(7313277-7313323)
chr5 (85-114)||(32310887-32310916)
[»] scaffold0007 (1 HSPs)
scaffold0007 (81-134)||(185518-185571)
[»] chr3 (5 HSPs)
chr3 (62-134)||(55142364-55142436)
chr3 (62-129)||(50662504-50662571)
chr3 (87-134)||(53653110-53653157)
chr3 (95-134)||(40892798-40892837)
chr3 (85-134)||(31064592-31064641)
[»] chr8 (7 HSPs)
chr8 (60-134)||(44362259-44362333)
chr8 (86-133)||(26491449-26491496)
chr8 (60-134)||(7662328-7662402)
chr8 (87-134)||(45114681-45114728)
chr8 (60-134)||(8457571-8457645)
chr8 (87-129)||(42563188-42563230)
chr8 (60-117)||(23722248-23722305)
[»] chr7 (4 HSPs)
chr7 (78-134)||(24495335-24495391)
chr7 (61-132)||(9047066-9047137)
chr7 (87-134)||(26453914-26453961)
chr7 (86-131)||(8919379-8919424)
[»] chr6 (3 HSPs)
chr6 (75-134)||(31955638-31955697)
chr6 (85-134)||(2656424-2656473)
chr6 (81-134)||(21608225-21608278)
[»] chr4 (10 HSPs)
chr4 (87-134)||(47089207-47089254)
chr4 (87-134)||(49081323-49081370)
chr4 (85-131)||(1955284-1955330)
chr4 (62-134)||(7633203-7633274)
chr4 (87-134)||(38609093-38609140)
chr4 (85-132)||(48743459-48743506)
chr4 (60-134)||(26194508-26194582)
chr4 (60-134)||(33033265-33033337)
chr4 (60-134)||(47742812-47742884)
chr4 (60-133)||(42274358-42274430)
[»] chr1 (3 HSPs)
chr1 (87-134)||(27919167-27919214)
chr1 (93-134)||(42887975-42888016)
chr1 (90-134)||(43638412-43638456)
[»] scaffold0603 (1 HSPs)
scaffold0603 (60-134)||(6930-7004)
[»] scaffold0735 (1 HSPs)
scaffold0735 (93-134)||(928-969)
[»] scaffold0191 (1 HSPs)
scaffold0191 (87-134)||(4538-4585)


Alignment Details
Target: chr2 (Bit Score: 586; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 200 - 971
Target Start/End: Original strand, 12799077 - 12799848
Alignment:
Q  200 agttgtttaactaatgttccgagagcattggttaacaagaaccgattgatgatgatgataattttgtaaaagtaatttggttaattaagtttggtttgaa 299  Q
    ||||| |||| || ||||||| ||  |||||||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  12799077 agttgcttaattagtgttccgggaatattggttaacaagacccgattgataatgataataattttgtaaaaataatttggttaattaagtttggtttgaa 12799176  T
Q  300 gtgatccannnnnnnnnncctttggttaaatgaagtgattcttttatatttgaatgctaataatgtaccattctaaaatcaaatttaatataaattctca 399  Q
    ||||| ||          ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12799177 gtgattcatttttttt--cctttggttaagtgaagtgattcatttatatttgaatgctaataatgtaccatgctaaaatcaaatttaatataaattctca 12799274  T
Q  400 acctaacgaaaaagctaccttttgatacatataaaaatagattaagaaaaacatacccacttcaaggtttgtaggaaaaatttaatttttaattgacaat 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12799275 acctaacgaaaaagctaccttttgatacatataaaaatagattaagaaaaacatacccacttcaaggtttgtaggaaaaaattaatttttaattgacaat 12799374  T
Q  500 agctaaaatattttatgtctattaagagatacaatcaactctaatacaatttgagtgaaatcaaacccattaaaagtagtagcccatggttaagttaaaa 599  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12799375 agctaaaatattttatgtccattaagagatacaatcaactctaatacaatttgagtgaaatcaaacccattaaaagtagtagcccatggttaagttaaaa 12799474  T
Q  600 aacaaacaacaaacctatgtaannnnnnnnnnattcgcaatgtaaatattttaacattggaagaccacagaatggacacacatagaatttcaagaaaaaa 699  Q
    ||||||||||||||||||||||          |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12799475 aacaaacaacaaacctatgtaattttttttttattcgcgatgtaaattttttaacattggaagaccacagaatggacacacatagaatttcaagaaaaaa 12799574  T
Q  700 caccgacaatgatgtttagagatccaactatttcccttttaataaaatcgattacaaacatatttatacctttttt--aaaaaattggataatcccatac 797  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||    
T  12799575 caccgacaatgatgtttagagatccaactatttcccttttaataaaatcgattacaaacatatttatacctttttttaaaaaaattggataatctcatac 12799674  T
Q  798 aaaattataaagattaatctcacaagtcgaatagtatcatgtacgagacaaagacgattttccacaattattaaccctataaactgtcagttggactcaa 897  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||| ||||||| |||||||||| |    
T  12799675 acaattataaagattaatctcacaagtcgaatagtatcatgtacaagacaaagacgatttcccacaactattaatcctacaaactgttagttggactcga 12799774  T
Q  898 acgaaaaattcaacttttataaattatagaacctaatatattttaatggtgaaattatccacttaatactcaaa 971  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12799775 acggaaaattcaacttttataaattatagaacctaatatattttaatggtgaaattatccacttaatactcaaa 12799848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 29108871 - 29108797
Alignment:
Q  60 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    ||||||||||||||||||   ||| |||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  29108871 gggaaatgttaatcggtgctcccgcgacactggttaaggaattataaaaggaaatattttcttgaaaattgtgta 29108797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 35470406 - 35470332
Alignment:
Q  60 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||||||| ||||| ||||| | |||||||||| ||||||| |||||||||||||  ||||||||||||||    
T  35470406 gggaaatgttaaccggtgcctccggggcactggttaaggaattattaaaggaaatatttccttgaaaattgtgta 35470332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 12798861 - 12798899
Alignment:
Q  8 agtaaagacacccgtgactcgtgacacgaggccaaacca 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12798861 agtaaagacacccgtgactcgtgacacgaggccaaacca 12798899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 12798966 - 12799010
Alignment:
Q  90 tggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||    
T  12798966 tggttaaagaattataaaaggaaatatattatcgaaaattgtgta 12799010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 15658769 - 15658843
Alignment:
Q  60 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||||||||| |||  |||| | ||||| |||| ||||||| ||||||||||||| |||| ||||||||||    
T  15658769 gggaaatgttaatcagtgcatccggggcactgattaaggaattattaaaggaaatatttcattggaaattgtgta 15658843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 32143615 - 32143656
Alignment:
Q  93 ttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||    
T  32143615 ttaaagaattagaaaagaaaatattttcttgaaaattgtgta 32143656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 29144467 - 29144394
Alignment:
Q  60 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||||| ||||||||| |||||||||| |||||  ||||||||||||||||||||| ||| ||||||||||    
T  29144467 gggaaatgttgatcggtgtc-ccgagacactagttaagaaattataaaaggaaatatttttttggaaattgtgta 29144394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 24181449 - 24181496
Alignment:
Q  87 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  24181449 cactggttaaggaattataaaaggaaatattgtattgaaaattgtgta 24181496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 26296502 - 26296455
Alignment:
Q  87 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26296502 cactggttaaagaattataaaaggaaatattgtattggaaattgtgta 26296455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 22732053 - 22732006
Alignment:
Q  87 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||| |||||||||| ||||||||||||||||| ||||||||||||||    
T  22732053 cactagttaaagaatcataaaaggaaatattttcttgaaaattgtgta 22732006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 7313323 - 7313277
Alignment:
Q  88 actggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    ||||| ||| ||||||||||| |||||||||| ||||||||||||||    
T  7313323 actggataaggaattataaaaagaaatattttcttgaaaattgtgta 7313277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 32310916 - 32310887
Alignment:
Q  85 gacactggttaaagaattataaaaggaaat 114  Q
    ||||||||||||||||||||||||||||||    
T  32310916 gacactggttaaagaattataaaaggaaat 32310887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 185571 - 185518
Alignment:
Q  81 ccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  185571 ccgagacactggttaaggaattataaaagaaaatattgtattgaaaattgtgta 185518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 55142436 - 55142364
Alignment:
Q  62 gaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||||| ||||||| |||  | |||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  55142436 gaaatgttaaccggtgtccccggaatactggttaaagaattataaaagaaaatatttttttggaaattgtgta 55142364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 50662571 - 50662504
Alignment:
Q  62 gaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaatt 129  Q
    |||||||||| ||||||||| ||| |||||||||| |||||||||||  ||||||| ||||| |||||    
T  50662571 gaaatgttaaccggtgtctcggaggcactggttaaggaattataaaataaaatattatattggaaatt 50662504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 53653110 - 53653157
Alignment:
Q  87 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    ||||||||||||||||||||||| |||| || ||||||||||||||||    
T  53653110 cactggttaaagaattataaaagaaaattttatattgaaaattgtgta 53653157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 40892798 - 40892837
Alignment:
Q  95 aaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  40892798 aaagaattataaaaggaaatattttcttggaaattgtgta 40892837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 31064641 - 31064592
Alignment:
Q  85 gacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||| ||||| ||||||||||| |||| ||||| ||||||||||||||    
T  31064641 gacactagttaaggaattataaaaagaaacatttttttgaaaattgtgta 31064592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 44362259 - 44362333
Alignment:
Q  60 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||||||| |  |||||||| | || ||||||| ||||||||||| |||||||| ||||||||||||||||    
T  44362259 gggaaatgttaaccaatgtctccggggcagtggttaaggaattataaaaagaaatattgtattgaaaattgtgta 44362333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 26491449 - 26491496
Alignment:
Q  86 acactggttaaagaattataaaaggaaatattttattgaaaattgtgt 133  Q
    ||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  26491449 acactagttaaagaattataaaaggaaatattgtattggaaattgtgt 26491496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 7662402 - 7662328
Alignment:
Q  60 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||||||| ||||| ||| |||  |||||||||  |||||| |||||||||||||| ||| ||||||||||    
T  7662402 gggaaatgttaaccggtgcctctgaggtactggttaagaaattattaaaggaaatatttttttggaaattgtgta 7662328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 45114681 - 45114728
Alignment:
Q  87 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||| ||||||||||||||||| ||||| |||| ||||||||||||||    
T  45114681 cacttgttaaagaattataaaatgaaatttttttttgaaaattgtgta 45114728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 8457645 - 8457571
Alignment:
Q  60 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||||||| | ||| | ||| | ||||| |||| |||||| ||||||||||||||| ||| ||||||||||    
T  8457645 gggaaatgttaaccagtgcccccgggccactgattaaggaattagaaaaggaaatattttcttggaaattgtgta 8457571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 42563188 - 42563230
Alignment:
Q  87 cactggttaaagaattataaaaggaaatattttattgaaaatt 129  Q
    |||| ||||| |||||||||||||||||||| |||||||||||    
T  42563188 cactagttaaggaattataaaaggaaatattgtattgaaaatt 42563230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 23722248 - 23722305
Alignment:
Q  60 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatatt 117  Q
    |||||||||||| ||||| | ||| | |||||||||| |||||| |||||||||||||    
T  23722248 gggaaatgttaaccggtgcccccggggcactggttaaggaattagaaaaggaaatatt 23722305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 24495391 - 24495335
Alignment:
Q  78 tctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||| |||| |||||||||||||||||| ||||||| | ||||||||||||||    
T  24495391 tctccgaggcacttgttaaagaattataaaagaaaatattatcttgaaaattgtgta 24495335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 9047066 - 9047137
Alignment:
Q  61 ggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtg 132  Q
    ||||||||||| |  |||| ||| |||||||||||| |||| |||||||||||| || ||||||||||||||    
T  9047066 ggaaatgttaaccaatgtccccgggacactggttaaggaatcataaaaggaaattttgtattgaaaattgtg 9047137  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 26453961 - 26453914
Alignment:
Q  87 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||| ||||| ||||||||||||||||| |||||| ||||||||||||    
T  26453961 cactagttaaggaattataaaaggaaatgttttatcgaaaattgtgta 26453914  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 8919379 - 8919424
Alignment:
Q  86 acactggttaaagaattataaaaggaaatattttattgaaaattgt 131  Q
    ||||||||||| |||||||||||||||||  ||| |||||||||||    
T  8919379 acactggttaaggaattataaaaggaaatgattttttgaaaattgt 8919424  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 31955638 - 31955697
Alignment:
Q  75 gtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||| || ||||||||||||  ||||||||||||||||||||  ||||||||||||||    
T  31955638 gtgtctgcgggacactggttaataaattataaaaggaaatatttatttgaaaattgtgta 31955697  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 2656424 - 2656473
Alignment:
Q  85 gacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||||||| |||||||||||| ||||||| ||||| ||||||||||    
T  2656424 gacactggttaaggaattataaaagaaaatattatattggaaattgtgta 2656473  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 21608278 - 21608225
Alignment:
Q  81 ccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    ||||||||||||||||  ||||||||||| |||| |||| || |||||||||||    
T  21608278 ccgagacactggttaagaaattataaaagaaaattttttcttcaaaattgtgta 21608225  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 47089207 - 47089254
Alignment:
Q  87 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  47089207 cactggttaaggaattataaaaggaaatgttttcttgaaaattgtgta 47089254  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 49081370 - 49081323
Alignment:
Q  87 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||||    
T  49081370 cactgattaaagaattagaaaaggaaatatttttttgaaaattgtgta 49081323  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 1955284 - 1955330
Alignment:
Q  85 gacactggttaaagaattataaaaggaaatattttattgaaaattgt 131  Q
    |||| |||||||||||||||||||| ||||||| |||||||||||||    
T  1955284 gacattggttaaagaattataaaagaaaatattgtattgaaaattgt 1955330  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 7633274 - 7633203
Alignment:
Q  62 gaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||||| ||||| ||||| |  ||||||||| |||||||||||||||||  ||| ||||||||||||||    
T  7633274 gaaatgttaaccggtg-ctccgggggactggttaaggaattataaaaggaaatgattttttgaaaattgtgta 7633203  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 38609093 - 38609140
Alignment:
Q  87 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||||| ||||||||||||||||| |||| | ||||||||||||    
T  38609093 cactggttaaggaattataaaaggaaatgttttctcgaaaattgtgta 38609140  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 48743459 - 48743506
Alignment:
Q  85 gacactggttaaagaattataaaaggaaatattttattgaaaattgtg 132  Q
    ||||||||||||  ||||||||||||||||||| ||||| ||||||||    
T  48743459 gacactggttaagaaattataaaaggaaatattgtattggaaattgtg 48743506  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 26194508 - 26194582
Alignment:
Q  60 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    ||||||||||||   ||||||||| | |||| ||||| ||||||||||| |||||||| | ||| ||||||||||    
T  26194508 gggaaatgttaagaagtgtctccggggcacttgttaaggaattataaaatgaaatattatcttgtaaattgtgta 26194582  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 33033337 - 33033265
Alignment:
Q  60 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||||||| ||||| |||| |||||||| |||  |||||||||||| ||||||||| ||| ||||||||||    
T  33033337 gggaaatgttaaccggtg-ctccaagacactgattat-gaattataaaagaaaatattttcttggaaattgtgta 33033265  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 47742884 - 47742812
Alignment:
Q  60 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    ||||||||||||||||| || ||| |||| ||||||| |||||||||||||||||||| | ||| || |||||||    
T  47742884 gggaaatgttaatcggtatc-ccg-gacattggttaaggaattataaaaggaaatattatcttggaatttgtgta 47742812  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 42274430 - 42274358
Alignment:
Q  60 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgt 133  Q
    ||||||||||||  ||||||| || | || |||||||  ||||| ||||||||||||||| |||||||||||||    
T  42274430 gggaaatgttaacaggtgtcttcggg-cattggttaagtaattagaaaaggaaatatttttttgaaaattgtgt 42274358  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 27919214 - 27919167
Alignment:
Q  87 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  27919214 cacttgttaaagaattataaaaggaaatattttcttgaaaattatgta 27919167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 42887975 - 42888016
Alignment:
Q  93 ttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    ||||||||||||||||||||||||||| ||||||||| ||||    
T  42887975 ttaaagaattataaaaggaaatattttcttgaaaattatgta 42888016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 43638456 - 43638412
Alignment:
Q  90 tggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    ||||||| |||||||||||||||||||| | ||||||||||||||    
T  43638456 tggttaaggaattataaaaggaaatattgtcttgaaaattgtgta 43638412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 6930 - 7004
Alignment:
Q  60 gggaaatgttaatcggtgtctccgagacactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    |||||||||||| |||||  |||| |||||| ||||| ||||| |||||||||||  ||| ||||||||||||||    
T  6930 gggaaatgttaaccggtgattccgggacactagttaaggaattgtaaaaggaaatgatttcttgaaaattgtgta 7004  T

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Target: scaffold0735 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 928 - 969
Alignment:
Q  93 ttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    ||||||||||||||||||||||||||| ||||||||| ||||    
T  928 ttaaagaattataaaaggaaatattttcttgaaaattatgta 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 4538 - 4585
Alignment:
Q  87 cactggttaaagaattataaaaggaaatattttattgaaaattgtgta 134  Q
    ||||| ||||||||| |||||| |||||||| ||||||||||||||||    
T  4538 cactgattaaagaataataaaatgaaatattgtattgaaaattgtgta 4585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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