View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4648-Insertion-7 (Length: 317)

Name: NF4648-Insertion-7
Description: NF4648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4648-Insertion-7
NF4648-Insertion-7
[»] chr3 (7 HSPs)
chr3 (116-286)||(26668716-26668886)
chr3 (8-101)||(26668588-26668684)
chr3 (240-286)||(7949789-7949835)
chr3 (240-286)||(41877686-41877732)
chr3 (241-286)||(31017421-31017466)
chr3 (242-275)||(50146488-50146521)
chr3 (241-277)||(5393870-5393906)
[»] chr6 (7 HSPs)
chr6 (240-286)||(32784736-32784782)
chr6 (242-286)||(15722530-15722574)
chr6 (242-286)||(28965867-28965911)
chr6 (240-286)||(25924891-25924937)
chr6 (242-286)||(19789103-19789147)
chr6 (242-286)||(30714680-30714724)
chr6 (242-286)||(34413092-34413136)
[»] chr8 (7 HSPs)
chr8 (242-286)||(43587641-43587685)
chr8 (240-286)||(29509264-29509310)
chr8 (236-286)||(35937539-35937589)
chr8 (242-286)||(9048343-9048387)
chr8 (242-286)||(34970207-34970251)
chr8 (242-286)||(36064030-36064074)
chr8 (242-286)||(43602450-43602494)
[»] chr4 (15 HSPs)
chr4 (242-286)||(9162066-9162110)
chr4 (240-286)||(4550332-4550378)
chr4 (240-286)||(39881057-39881103)
chr4 (240-286)||(40335787-40335833)
chr4 (236-286)||(51224865-51224915)
chr4 (240-277)||(3078944-3078981)
chr4 (240-277)||(28899240-28899277)
chr4 (242-286)||(169529-169573)
chr4 (242-286)||(11457591-11457635)
chr4 (242-286)||(17363230-17363274)
chr4 (242-286)||(29513723-29513767)
chr4 (241-277)||(33914373-33914409)
chr4 (241-285)||(39010165-39010209)
chr4 (242-286)||(47998594-47998638)
chr4 (242-286)||(56025256-56025300)
[»] chr2 (6 HSPs)
chr2 (240-275)||(39309975-39310010)
chr2 (241-277)||(7121389-7121425)
chr2 (242-286)||(7498018-7498062)
chr2 (241-277)||(19316601-19316637)
chr2 (242-286)||(30413753-30413797)
chr2 (242-286)||(42665839-42665883)
[»] chr1 (6 HSPs)
chr1 (240-286)||(15061843-15061889)
chr1 (240-286)||(37669396-37669442)
chr1 (240-277)||(16836140-16836177)
chr1 (240-277)||(28457383-28457420)
chr1 (242-286)||(44672057-44672101)
chr1 (242-286)||(49189235-49189279)
[»] scaffold0115 (1 HSPs)
scaffold0115 (240-277)||(35534-35571)
[»] scaffold0020 (1 HSPs)
scaffold0020 (241-286)||(155905-155950)
[»] chr5 (4 HSPs)
chr5 (242-283)||(7077372-7077413)
chr5 (241-277)||(27440478-27440514)
chr5 (242-286)||(36548407-36548451)
chr5 (242-286)||(36572691-36572735)
[»] scaffold0024 (1 HSPs)
scaffold0024 (242-286)||(60469-60513)
[»] chr7 (6 HSPs)
chr7 (242-286)||(19426580-19426624)
chr7 (242-286)||(24700121-24700165)
chr7 (242-286)||(27070696-27070739)
chr7 (242-286)||(27207574-27207617)
chr7 (240-268)||(40900893-40900921)
chr7 (241-277)||(41080125-41080161)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 116 - 286
Target Start/End: Original strand, 26668716 - 26668886
Alignment:
Q  116 ttttatgagtttagcaaatcacaacaatcatttactatatgcgatttataagtggtcagaattaaagtttaataatttttatgatctaatatctattatt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||    
T  26668716 ttttatgagtttagcaaatcacaacaatcatttactatatgcgatttataagtggttagaattaaagtttaataatttttatgatctaatatcttttgtt 26668815  T
Q  216 attgagtgataatgtaaaatttggatgagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||| |||||||||||||    
T  26668816 attgagtgataatgtaaaatttgaatgagaaataatatttgtacaatcattttattataactctttgacaa 26668886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 26668588 - 26668684
Alignment:
Q  8 ttgggaccctttcaatttctctccacaacctcatcaccagta---gtaacacttttgtttcttgggcagtttgaaaatcataatgaaaaaagtatag 101  Q
    |||||||||||||||||||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26668588 ttgggaccctttcaatttctctccacaacctcattaccagtagtagtaacacttttgtttcttgggcagtttgaaaatcataatgaaaaaagtatag 26668684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 7949789 - 7949835
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||||| || ||||||| ||||||| ||||||||    
T  7949789 atgagaaatgatatttgtacaaccattttgctacaactttttgacaa 7949835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 41877686 - 41877732
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||||| || ||||||| ||||||| ||||||||    
T  41877686 atgagaaatgatatttgtacaaccattttgctacaactttttgacaa 41877732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 31017466 - 31017421
Alignment:
Q  241 tgagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    |||||||||||||||||| ||||||||| | |||||| ||||||||    
T  31017466 tgagaaatgatatttgtacaatcattttctaacaactttttgacaa 31017421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 50146488 - 50146521
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaa 275  Q
    ||||||||||||||||||||||||||||| ||||    
T  50146488 gagaaatgatatttgtataatcattttgtgacaa 50146521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 5393906 - 5393870
Alignment:
Q  241 tgagaaatgatatttgtataatcattttgttacaact 277  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  5393906 tgagaaatgatatttgtacaatcattttcttacaact 5393870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 32784736 - 32784782
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||    
T  32784736 atgagaaatgatatttgtacaattattttgttacaactttttgacaa 32784782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 15722574 - 15722530
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||    
T  15722574 gagaaatgatatttgtacaatcattttgtgacaactttttgacaa 15722530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 28965911 - 28965867
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||    
T  28965911 gagaaatgatatttgtacaaccattttgttacaactttttgacaa 28965867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 25924937 - 25924891
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||||| || ||||||| ||||||| ||||||||    
T  25924937 atgagaaatgatatttgtacaaccattttgctacaactttttgacaa 25924891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 19789147 - 19789103
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| || |||||| |||||||| ||||||||    
T  19789147 gagaaatgatatttgtacaaccattttattacaactttttgacaa 19789103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 30714680 - 30714724
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| ||||||||||| ||| || ||||||||    
T  30714680 gagaaatgatatttgtacaatcattttgtgacagctttttgacaa 30714724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 34413092 - 34413136
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| |||||||||| ||||| | ||||||||    
T  34413092 gagaaatgatatttgtacaatcattttgctacaattttttgacaa 34413136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 43587641 - 43587685
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||||    
T  43587641 gagaaatgatatttgtataaccattttgctacaactttttgacaa 43587685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 29509264 - 29509310
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||||| || ||||||| ||||||| ||||||||    
T  29509264 atgagaaatgatatttgtacaaccattttgctacaactttttgacaa 29509310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 35937589 - 35937539
Alignment:
Q  236 ttggatgagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||||||||| || |||||||| |||||| || |||||    
T  35937589 ttggatgagaaatgatatttgtacaaccattttgtaacaacttttggacaa 35937539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 9048387 - 9048343
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    |||||||||||||||||||| |||||| | |||||| ||||||||    
T  9048387 gagaaatgatatttgtataaccattttctaacaactttttgacaa 9048343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 34970207 - 34970251
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| |||| |||||| |||||| ||||||||    
T  34970207 gagaaatgatatttgtacaatccttttgtaacaactttttgacaa 34970251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 36064030 - 36064074
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| ||||||||||| |||||| || |||||    
T  36064030 gagaaatgatatttgtacaatcattttgtgacaacttttggacaa 36064074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 43602494 - 43602450
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| || ||||||| ||||||| ||||||||    
T  43602494 gagaaatgatatttgtacaaccattttgctacaactttttgacaa 43602450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 9162066 - 9162110
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||    
T  9162066 gagaaatgatatttgtacaatcattttgtgacaactttttgacaa 9162110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 4550332 - 4550378
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||||| |||||||||| ||||||| ||| ||||    
T  4550332 atgagaaatgatatttgtacaatcattttgctacaactttttaacaa 4550378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 39881103 - 39881057
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||||| ||||||||| | |||||| ||||||||    
T  39881103 atgagaaatgatatttgtacaatcattttctaacaactttttgacaa 39881057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 40335787 - 40335833
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||||| ||||||||| |||||| | ||||||||    
T  40335787 atgagaaatgatatttgtacaatcattttattacaattttttgacaa 40335833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 51224915 - 51224865
Alignment:
Q  236 ttggatgagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    |||| |||||||||||||||||| || ||||||| ||||||| ||||||||    
T  51224915 ttggttgagaaatgatatttgtacaaccattttgctacaactttttgacaa 51224865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 3078981 - 3078944
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaact 277  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  3078981 atgagaaatgatatttgtacaatcattttgtaacaact 3078944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 28899277 - 28899240
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaact 277  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  28899277 atgagaaatgatatttgtacaatcattttggtacaact 28899240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 169573 - 169529
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| || |||||||| |||||| ||||||||    
T  169573 gagaaatgatatttgtacaaccattttgtgacaactttttgacaa 169529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 11457591 - 11457635
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||||||||||||  | |||||| ||||||||    
T  11457591 gagaaatgatatttgtataatcatttaataacaactttttgacaa 11457635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 17363230 - 17363274
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| ||||| ||| |||||||| ||||||||    
T  17363230 gagaaatgatatttgtacaatcactttattacaactttttgacaa 17363274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 29513767 - 29513723
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| || ||||||| ||||||| ||||||||    
T  29513767 gagaaatgatatttgtacaaccattttgctacaactttttgacaa 29513723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 33914409 - 33914373
Alignment:
Q  241 tgagaaatgatatttgtataatcattttgttacaact 277  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  33914409 tgagaaatgatatttgtataaccattttggtacaact 33914373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 39010209 - 39010165
Alignment:
Q  241 tgagaaatgatatttgtataatcattttgttacaactctttgaca 285  Q
    |||||||||||||||||| || |||||||| |||||| |||||||    
T  39010209 tgagaaatgatatttgtacaaccattttgtgacaactttttgaca 39010165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 47998594 - 47998638
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| || |||||||| |||||| ||||||||    
T  47998594 gagaaatgatatttgtacaaccattttgtaacaactttttgacaa 47998638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 56025256 - 56025300
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| || ||||||| ||||||| ||||||||    
T  56025256 gagaaatgatatttgtacaaccattttgctacaactttttgacaa 56025300  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 39309975 - 39310010
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaa 275  Q
    ||||||||||||||||||||||||||||||| ||||    
T  39309975 atgagaaatgatatttgtataatcattttgtaacaa 39310010  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 7121389 - 7121425
Alignment:
Q  241 tgagaaatgatatttgtataatcattttgttacaact 277  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  7121389 tgagaaatgatatttgtataaccattttgtaacaact 7121425  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 7498062 - 7498018
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| || |||||| |||||||| ||||||||    
T  7498062 gagaaatgatatttgtacaaccattttattacaactttttgacaa 7498018  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 19316637 - 19316601
Alignment:
Q  241 tgagaaatgatatttgtataatcattttgttacaact 277  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  19316637 tgagaaatgatatttgaataatcattttgtgacaact 19316601  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 30413797 - 30413753
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| || ||||||| ||||||| ||||||||    
T  30413797 gagaaatgatatttgtacaaccattttgctacaactttttgacaa 30413753  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 42665883 - 42665839
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| ||||| ||| |||||||| ||||||||    
T  42665883 gagaaatgatatttgtacaatcactttattacaactttttgacaa 42665839  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 15061843 - 15061889
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    |||||||||||||||||||||| || ||||| |||||| ||||||||    
T  15061843 atgagaaatgatatttgtataaccactttgtgacaactttttgacaa 15061889  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 37669396 - 37669442
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||||| |||||||||| ||||||| ||| ||||    
T  37669396 atgagaaatgatatttgtacaatcattttgatacaactttttaacaa 37669442  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 16836177 - 16836140
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaact 277  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  16836177 atgagaaatgatatttgtacaatcattttgtgacaact 16836140  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 28457420 - 28457383
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaact 277  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  28457420 atgagaaatgatatttgtacaatcattttggtacaact 28457383  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 44672101 - 44672057
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| ||||||||| | |||||| ||||||||    
T  44672101 gagaaatgatatttgtacaatcattttttaacaactttttgacaa 44672057  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 49189279 - 49189235
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| || ||||||| ||||||| ||||||||    
T  49189279 gagaaatgatatttgtacaaccattttgctacaactttttgacaa 49189235  T

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Target: scaffold0115 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 35571 - 35534
Alignment:
Q  240 atgagaaatgatatttgtataatcattttgttacaact 277  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  35571 atgagaaatgatatttgtacaatcattttgctacaact 35534  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 155905 - 155950
Alignment:
Q  241 tgagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    |||||||||||||||||| || |||||| |||||||| ||||||||    
T  155905 tgagaaatgatatttgtacaaccattttattacaactttttgacaa 155950  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 7077413 - 7077372
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttga 283  Q
    ||||||||||||||||| || ||||||||||||||| |||||    
T  7077413 gagaaatgatatttgtacaaccattttgttacaactttttga 7077372  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 27440478 - 27440514
Alignment:
Q  241 tgagaaatgatatttgtataatcattttgttacaact 277  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  27440478 tgagaaatgatatttgtacaatcattttgtgacaact 27440514  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 36548451 - 36548407
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    |||||||||||||||||||| |||||||| |||||| | ||||||    
T  36548451 gagaaatgatatttgtataaccattttgtgacaactttctgacaa 36548407  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 36572691 - 36572735
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||||||  ||||||| |||||| ||||||||    
T  36572691 gagaaatgatatttgtataactattttgtgacaactttttgacaa 36572735  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 60469 - 60513
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| || |||||| |||||||| ||||||||    
T  60469 gagaaatgatatttgtacaaccattttattacaactttttgacaa 60513  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 19426580 - 19426624
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| || |||||||| |||||| ||||||||    
T  19426580 gagaaatgatatttgtacaaccattttgtgacaactttttgacaa 19426624  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 24700121 - 24700165
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| ||||||||||| |||||| ||| ||||    
T  24700121 gagaaatgatatttgtacaatcattttgtaacaacttttttacaa 24700165  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 27070739 - 27070696
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||    
T  27070739 gagaaatgatatttgtacaatcattttattacaact-tttgacaa 27070696  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 27207574 - 27207617
Alignment:
Q  242 gagaaatgatatttgtataatcattttgttacaactctttgacaa 286  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||    
T  27207574 gagaaatgatatttgtacaatcattttattacaact-tttgacaa 27207617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 40900893 - 40900921
Alignment:
Q  240 atgagaaatgatatttgtataatcatttt 268  Q
    |||||||||||||||||||||||||||||    
T  40900893 atgagaaatgatatttgtataatcatttt 40900921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 41080125 - 41080161
Alignment:
Q  241 tgagaaatgatatttgtataatcattttgttacaact 277  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  41080125 tgagaaatgatatttgtacaatcattttgtgacaact 41080161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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