View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4648_high_15 (Length: 241)
Name: NF4648_high_15
Description: NF4648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4648_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 29862083 - 29862007
Alignment:
| Q |
147 |
atcaattaatggattgcaaatccgttatcatgtttgggtttcaaatctcagtaacggtgcaacagcgtttgagcttc |
223 |
Q |
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| T |
29862083 |
atcaattaatggattgcaaatccgttatcatgtttgggtttcaaatctcagtaacggtgcaacagcgtttgagcttc |
29862007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 29862154 - 29862123
Alignment:
| Q |
76 |
ttgtagatccatttatcaatatcaaaacatca |
107 |
Q |
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| T |
29862154 |
ttgtagatccatttatcaatatcaaaacatca |
29862123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 1148792 - 1148707
Alignment:
| Q |
22 |
acgcaaactccctactctcaacagttcatctttttcaaaagaaaacaataacccttgtagatccatttatcaatatcaaaacatca |
107 |
Q |
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| T |
1148792 |
acgcaaactccatactctcaacacctcatcttcttcaaaagaaaacaataacccttgtagatccatttatcaatatcaaaacatca |
1148707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 35563626 - 35563541
Alignment:
| Q |
22 |
acgcaaactccctactctcaacagttcatctttttcaaaagaaaacaataacccttgtagatccatttatcaatatcaaaacatca |
107 |
Q |
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| T |
35563626 |
acgcaaactcccttctctcaacacttcatcttcttcaaaagaaaacaataacccttttagatccatttatcaatatcaaaacatca |
35563541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 1148627 - 1148551
Alignment:
| Q |
147 |
atcaattaatggattgcaaatccgttatcatgtttgggtttcaaatctcagtaacggtgcaacagcgtttgagcttc |
223 |
Q |
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| T |
1148627 |
atcaattaatggattgcaaatccgttatcatgtttaggtttcaaatctcagtaacggtgcagcagcgtttgcgcttc |
1148551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 35563476 - 35563409
Alignment:
| Q |
147 |
atcaattaatggattgcaaatccgttatcatgtttgggtttcaaatctcagtaacggtgcaacagcgt |
214 |
Q |
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| T |
35563476 |
atcaattaatcgattgtaaatccgttatcatgtttggctttcaaatctcagtaacggtgcagcagcgt |
35563409 |
T |
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