View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4648_high_18 (Length: 237)
Name: NF4648_high_18
Description: NF4648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4648_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 39742914 - 39743015
Alignment:
| Q |
1 |
atcatcgctatcacacagttttctctgttctcctgatacccttttcaccaacaattcaaaaaactccaattccatcaccttcacggaccgtttcaccaaa |
100 |
Q |
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| T |
39742914 |
atcatcactatcacacagttatctctgttctcctgatacccttttcaccaacaattcaaaacactccaattccatcattttcacaaaccatttcaccaaa |
39743013 |
T |
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| Q |
101 |
aa |
102 |
Q |
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|| |
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| T |
39743014 |
aa |
39743015 |
T |
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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 39743012 - 39743063
Alignment:
| Q |
173 |
aaaactttgttagaaaccttcactgttgatgttcatagagcagaaaatagtg |
224 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
39743012 |
aaaactttgttagaaaccttcaatgttgatgttcatagagtagaaaatagtg |
39743063 |
T |
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