View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4648_high_4 (Length: 464)

Name: NF4648_high_4
Description: NF4648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4648_high_4
NF4648_high_4
[»] chr6 (31 HSPs)
chr6 (18-461)||(31284504-31284947)
chr6 (18-424)||(26729210-26729635)
chr6 (18-424)||(26623232-26623658)
chr6 (255-331)||(26623636-26623712)
chr6 (255-331)||(26729613-26729689)
chr6 (354-449)||(27214648-27214743)
chr6 (354-449)||(27234485-27234580)
chr6 (348-410)||(28234830-28234892)
chr6 (89-142)||(26647031-26647084)
chr6 (89-142)||(26752999-26753052)
chr6 (105-142)||(26802998-26803035)
chr6 (349-410)||(28181381-28181442)
chr6 (349-410)||(28227217-28227278)
chr6 (348-410)||(26937373-26937435)
chr6 (108-142)||(27610716-27610750)
chr6 (348-410)||(28185633-28185695)
chr6 (348-410)||(28297571-28297633)
chr6 (348-410)||(28325744-28325806)
chr6 (348-410)||(28514440-28514502)
chr6 (105-142)||(25539095-25539132)
chr6 (89-142)||(27592598-27592651)
chr6 (89-142)||(27604281-27604334)
chr6 (89-142)||(27677197-27677250)
chr6 (89-142)||(27679502-27679555)
chr6 (89-142)||(27705981-27706034)
chr6 (358-394)||(25580002-25580038)
chr6 (358-394)||(26056209-26056245)
chr6 (358-394)||(26076179-26076215)
chr6 (348-448)||(27337923-27338023)
chr6 (348-448)||(27398663-27398763)
chr6 (348-400)||(28098215-28098267)
[»] scaffold0038 (3 HSPs)
scaffold0038 (348-410)||(34992-35054)
scaffold0038 (349-410)||(27715-27776)
scaffold0038 (348-410)||(117059-117121)
[»] chr1 (1 HSPs)
chr1 (305-394)||(28127481-28127570)
[»] chr2 (1 HSPs)
chr2 (348-404)||(3279976-3280032)
[»] chr4 (4 HSPs)
chr4 (348-417)||(5090806-5090875)
chr4 (105-141)||(18679149-18679185)
chr4 (105-141)||(18723674-18723710)
chr4 (105-141)||(18731093-18731129)
[»] scaffold0019 (1 HSPs)
scaffold0019 (348-404)||(58140-58196)


Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 31284947 - 31284504
Alignment:
Q  18 aaaacaagattaaagggaagtagagtacctctgactacaatcacttgacaagtctggtgtctgattaaaagctatcttcccagcaagcttgtattcatat 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31284947 aaaacaagattcaagggaagtagagtacctctgactacaatcacttgacaagtctggtgtctgattaaaagctatcttcccagtaagcttgtattcatat 31284848  T
Q  118 ctattcatgcccaacaagataagttggtgaacaaatnnnnnnncaatcacatctatatcttgacgaatatatcatacaattctaattgttttgacataca 217  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284847 ctattcatgcccaacaagataagttggtgaacaaataaaaaaacaatcacatctatatcttgacgaatatatcatacaattctaattgttttgacataca 31284748  T
Q  218 ataactagtatttgtttaaatatataaataaaaaatgtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaaga 317  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284747 ataactaatatttgtttaaatatataaataaaaaatgtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaaga 31284648  T
Q  318 ttgaagtgaagtaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatct 417  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284647 ttgaagtgaagaaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatct 31284548  T
Q  418 gtattatgttggaacctctcttcatgcttagcctatgctactcc 461  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||    
T  31284547 gtattatgttggaacctctcttcatgcttagccaatgcttctcc 31284504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 26729635 - 26729210
Alignment:
Q  18 aaaacaagattaaagggaagtagagtacctctgactacaat---cacttgacaagtctggtgtctgattaaaagctatcttcccagcaagcttgtattca 114  Q
    ||||||||||| ||| |||||||||||||  ||||||||||   | |||||| |||| |||||||| | || || |||||||| || |||||||||||||    
T  26729635 aaaacaagattcaagtgaagtagagtacccttgactacaatggtcgcttgacgagtccggtgtctggtcaagagttatcttcctagtaagcttgtattca 26729536  T
Q  115 tatctattcatgcccaacaagataagttggtgaacaaatnnnnnnncaatcacatctatatcttgacgaatatatcatacaattctaattgttttgacat 214  Q
    |||||||| ||||| ||||||||   ||| || ||||||        |||||||| |||||||| || | ||| |||||||||||||| |||||||| ||    
T  26729535 tatctattaatgcc-aacaagat---ttgttgcacaaataaaaaaataatcacatttatatcttaacaattatgtcatacaattctaaatgttttgatat 26729440  T
Q  215 acaa-taactagtatttgtttaaatatataaataaaaaat---gtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaa----- 305  Q
    |||| || ||| |||||||||||||||||||| |||||||   |||||||||||||||||| |||||||||||||| ||||||| ||||||||||         
T  26729439 acaaatacctaatatttgtttaaatatataaacaaaaaattgtgtttcccttttaagcattaatatggaatgattggggaataagaattgaagaaataaa 26729340  T
Q  306 -----------ggcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatt 394  Q
               |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| | |||||||||||||||||    
T  26729339 gcatatatgaaggcaaaacaagattgaagtgaagtaggctacccaggatgacgatggtctccagacaagttagctgcttgtgcaagagctatcttccatt 26729240  T
Q  395 tttgcaacctttccatatgatctgtattat 424  Q
    |||||||||| ||||||| || ||||||||    
T  26729239 tttgcaacctctccatattatatgtattat 26729210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 26623658 - 26623232
Alignment:
Q  18 aaaacaagattaaagggaagtagagtacctctgactacaat---cacttgacaagtctggtgtctgattaaaagctatcttcccagcaagcttgtattca 114  Q
    ||||||||||| ||| |||||||||||||  ||||||||||   | |||||| |||| |||||||| | || || |||||||| || |||||||||||||    
T  26623658 aaaacaagattcaagtgaagtagagtacccttgactacaatggtcgcttgacgagtccggtgtctggtcaagagttatcttcctagtaagcttgtattca 26623559  T
Q  115 tatctattcatgcccaacaagataagttggtgaacaaatnnnnnnnc-aatcacatctatatcttgacgaatatatcatacaattctaattgttttgaca 213  Q
    |||||||| ||||| ||||||||   ||| || ||||||         |||||||| |||||||| || | ||| |||||||||||||| |||||||| |    
T  26623558 tatctattaatgcc-aacaagat---ttgttgcacaaataaaaaaaataatcacatttatatcttaacaattatgtcatacaattctaaatgttttgata 26623463  T
Q  214 tacaa-taactagtatttgtttaaatatataaataaaaaat---gtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaa---- 305  Q
    ||||| || ||| |||||||||||||||||||| |||||||   |||||||||||||||||| |||||||||||||| ||||||| ||||||||||        
T  26623462 tacaaatacctaatatttgtttaaatatataaacaaaaaattgtgtttcccttttaagcattaatatggaatgattggggaataagaattgaagaaataa 26623363  T
Q  306 ------------ggcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccat 393  Q
                |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| | ||||||||||||||||    
T  26623362 agcatatatgaaggcaaaacaagattgaagtgaagtaggctacccaggatgacgatggtctccagacaagttagctgcttgtgcaagagctatcttccat 26623263  T
Q  394 ttttgcaacctttccatatgatctgtattat 424  Q
    ||||||||||| ||||||| || ||||||||    
T  26623262 ttttgcaacctctccatattatatgtattat 26623232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 331
Target Start/End: Complemental strand, 26623712 - 26623636
Alignment:
Q  255 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 331  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26623712 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26623636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 331
Target Start/End: Complemental strand, 26729689 - 26729613
Alignment:
Q  255 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 331  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26729689 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26729613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 449
Target Start/End: Complemental strand, 27214743 - 27214648
Alignment:
Q  354 gccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagc 449  Q
    |||||| |||||||| |||||  ||||||||||||||||||| |||||||  ||||| |  ||  | |||| ||| ||||||||||||||||||||    
T  27214743 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagc 27214648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 449
Target Start/End: Original strand, 27234485 - 27234580
Alignment:
Q  354 gccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagc 449  Q
    |||||| |||||||| |||||  ||||||||||||||||||| |||||||  ||||| |  ||  | |||| ||| ||||||||||||||||||||    
T  27234485 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagc 27234580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 410
Target Start/End: Complemental strand, 28234892 - 28234830
Alignment:
Q  348 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 410  Q
    ||||| |||||| ||||||| || |||||||||||| ||||||||||| |||||||| |||||    
T  28234892 atggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccat 28234830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 26647084 - 26647031
Alignment:
Q  89 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 142  Q
    |||||||||||  || |||||||||||||||||||||| || ||||||||||||    
T  26647084 ctatcttcccaataaacttgtattcatatctattcatgtcccacaagataagtt 26647031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 26753052 - 26752999
Alignment:
Q  89 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 142  Q
    |||||||||||  || |||||||||||||||||||||| || ||||||||||||    
T  26753052 ctatcttcccaataaacttgtattcatatctattcatgtcccacaagataagtt 26752999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 26803035 - 26802998
Alignment:
Q  105 cttgtattcatatctattcatgcccaacaagataagtt 142  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26803035 cttgtattcatatctattcatgtccaacaagataagtt 26802998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 28181442 - 28181381
Alignment:
Q  349 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 410  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28181442 tggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccat 28181381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 28227278 - 28227217
Alignment:
Q  349 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 410  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28227278 tggtggccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctatccat 28227217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 410
Target Start/End: Complemental strand, 26937435 - 26937373
Alignment:
Q  348 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 410  Q
    ||||| |||||||||||| || |||||  |||||||||||||||||||  ||||||| |||||    
T  26937435 atggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccat 26937373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 27610716 - 27610750
Alignment:
Q  108 gtattcatatctattcatgcccaacaagataagtt 142  Q
    |||||||||||||||||||||||| ||||||||||    
T  27610716 gtattcatatctattcatgcccaataagataagtt 27610750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 410
Target Start/End: Complemental strand, 28185695 - 28185633
Alignment:
Q  348 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 410  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28185695 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28185633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 410
Target Start/End: Original strand, 28297571 - 28297633
Alignment:
Q  348 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 410  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28297571 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28297633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 410
Target Start/End: Complemental strand, 28325806 - 28325744
Alignment:
Q  348 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 410  Q
    ||||| ||| || |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28325806 atggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 28325744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 410
Target Start/End: Complemental strand, 28514502 - 28514440
Alignment:
Q  348 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 410  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28514502 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28514440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 25539132 - 25539095
Alignment:
Q  105 cttgtattcatatctattcatgcccaacaagataagtt 142  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  25539132 cttgtattcatatctattcatgtccaataagataagtt 25539095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 27592598 - 27592651
Alignment:
Q  89 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 142  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27592598 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27592651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 27604281 - 27604334
Alignment:
Q  89 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 142  Q
    ||||||| |||  ||||| ||||||||||||||||||| |||| ||||||||||    
T  27604281 ctatctttccaataagctcgtattcatatctattcatgtccaataagataagtt 27604334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 27677197 - 27677250
Alignment:
Q  89 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 142  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27677197 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27677250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 27679555 - 27679502
Alignment:
Q  89 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 142  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27679555 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27679502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 27705981 - 27706034
Alignment:
Q  89 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 142  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27705981 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27706034  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 25580038 - 25580002
Alignment:
Q  358 gacaagttagctgcttgagtaagagctatcttccatt 394  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  25580038 gacaagttagcagcttgggtaagagctatcttccatt 25580002  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 26056245 - 26056209
Alignment:
Q  358 gacaagttagctgcttgagtaagagctatcttccatt 394  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26056245 gacaagttagcagcttgagtaagagccatcttccatt 26056209  T

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Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 26076215 - 26076179
Alignment:
Q  358 gacaagttagctgcttgagtaagagctatcttccatt 394  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26076215 gacaagttagcagcttgagtaagagccatcttccatt 26076179  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 448
Target Start/End: Original strand, 27337923 - 27338023
Alignment:
Q  348 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 447  Q
    ||||| ||| || |||||||| ||||| |||||||| ||||||||||| | |||||| ||||| |  ||  | |||| ||||||| | ||||||||||||    
T  27337923 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgctta 27338022  T
Q  448 g 448  Q
    |    
T  27338023 g 27338023  T

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Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 448
Target Start/End: Original strand, 27398663 - 27398763
Alignment:
Q  348 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 447  Q
    ||||| ||| || |||||||| ||||| |||||||| ||||||||||| | |||||| ||||| |  ||  | |||| ||||||| | ||||||||||||    
T  27398663 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgctta 27398762  T
Q  448 g 448  Q
    |    
T  27398763 g 27398763  T

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Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 400
Target Start/End: Original strand, 28098215 - 28098267
Alignment:
Q  348 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgca 400  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||||||||| ||||    
T  28098215 atggtggccggacaagttagctgcttggttaagagccatcttccatttatgca 28098267  T

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Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 410
Target Start/End: Complemental strand, 35054 - 34992
Alignment:
Q  348 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 410  Q
    ||||| |||||| ||||||| || |||||||||||| ||||||||||| |||||||| |||||    
T  35054 atggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccat 34992  T

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Target: scaffold0038; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 27776 - 27715
Alignment:
Q  349 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 410  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  27776 tggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccat 27715  T

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Target: scaffold0038; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 410
Target Start/End: Complemental strand, 117121 - 117059
Alignment:
Q  348 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 410  Q
    ||||| ||| || |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  117121 atggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 117059  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 394
Target Start/End: Original strand, 28127481 - 28127570
Alignment:
Q  305 aggcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatt 394  Q
    ||||||||||||||| ||||  |||||| ||||| |||  |  ||||| ||| ||||||||||| ||||| || ||||||||||||||||    
T  28127481 aggcaaaacaagatttaagtatagtagggtaccctggactataatggtagccggacaagttagcagcttgggttagagctatcttccatt 28127570  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 3280032 - 3279976
Alignment:
Q  348 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 404  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||||||||| ||||||||    
T  3280032 atggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacct 3279976  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 5090806 - 5090875
Alignment:
Q  348 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatct 417  Q
    ||||| ||||||||| |||||||||||  ||||||| |||| |||||| |||||| | ||||||| ||||    
T  5090806 atggtagccagacaaattagctgcttgcttaagagccatctcccatttctgcaacttctccatattatct 5090875  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 18679149 - 18679185
Alignment:
Q  105 cttgtattcatatctattcatgcccaacaagataagt 141  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18679149 cttgtattcatatctattcatgtccaataagataagt 18679185  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 18723674 - 18723710
Alignment:
Q  105 cttgtattcatatctattcatgcccaacaagataagt 141  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18723674 cttgtattcatatctattcatgtccaataagataagt 18723710  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 18731093 - 18731129
Alignment:
Q  105 cttgtattcatatctattcatgcccaacaagataagt 141  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18731093 cttgtattcatatctattcatgtccaataagataagt 18731129  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 404
Target Start/End: Original strand, 58140 - 58196
Alignment:
Q  348 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 404  Q
    ||||| |||||| |||||||| |  |||||||||||| |||||||||| ||||||||    
T  58140 atggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacct 58196  T

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