View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4648_high_7 (Length: 358)
Name: NF4648_high_7
Description: NF4648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4648_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 15744192 - 15743991
Alignment:
| Q |
9 |
tatacatactattattcccttctaccaagaaaaataatatactattatgccggcttaattagaagagtattgtcaaacaaaaagttttatttaggcattc |
108 |
Q |
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| T |
15744192 |
tatacatactattattccgttctaccaaaaaaaataatatactattatgccggcttaattagaagagtgtagtcaaacaaaaagttttttttaggcagtc |
15744093 |
T |
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| Q |
109 |
aaacnnnnnnnnnnttgtaaagaagtctaacaaaaaagttaatgaagaaacaataggcaaaagtgtatgcatactttattttgatttttcccattctaat |
208 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15744092 |
aaac-aaaaaaaaattgtaaagaagtctaacaaaaaagttaatgagaaaacaataggcaaaagtgtatgcatactttattttgatttatcccattctaat |
15743994 |
T |
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| Q |
209 |
taa |
211 |
Q |
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||| |
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| T |
15743993 |
taa |
15743991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 15743954 - 15743910
Alignment:
| Q |
297 |
aaaaaccagaagaaaatgtatagcaatttcaaggagcaagcaata |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15743954 |
aaaaaccagaagaaaatgtatagcaatttcaaggagcaagcaata |
15743910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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