View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4648_high_9 (Length: 310)
Name: NF4648_high_9
Description: NF4648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4648_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 47731180 - 47731415
Alignment:
| Q |
19 |
agaacatcaagggcatgaccagaaagaggaagaac-tgacccattcatagaaatgtagctcattctgcatatgatgagacttttcttcattttgtgtgtg |
117 |
Q |
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| T |
47731180 |
agaacaccaagggcatgaccagaaagaggaagaacctgacccgttcatagaaatgtagcccattctgcatatgatgagacttttcttcattgtgtgtgtg |
47731279 |
T |
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| Q |
118 |
tgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgacgacgctataaattggatcaagaagagggtg |
217 |
Q |
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| T |
47731280 |
tgattgaacccattctaagcacttgtggcagcaagcaggatttaatcaatctgattttttctctaacgacgacactataaattggatcaagaacagggtg |
47731379 |
T |
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| Q |
218 |
atggggccttactatttcctttttgcagcaacaatt |
253 |
Q |
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| T |
47731380 |
atggggccttactatttcctttttgcagcaacaatt |
47731415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 88 - 249
Target Start/End: Complemental strand, 50823520 - 50823362
Alignment:
| Q |
88 |
atgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgac |
187 |
Q |
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| T |
50823520 |
atgatgagacttttcttcatt--gtgtgcgtgattgcacccattctaagcacttgtggcagcaagcaggttttaatcaatctgattttttctctaatgag |
50823423 |
T |
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| Q |
188 |
gacgctataaattggatcaagaagagggtgatggggccttactatttcctttttgcagcaac |
249 |
Q |
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| T |
50823422 |
gatgctataaattggatcaagaatggagtgat-gacccttaccctttcctttttgcagcaac |
50823362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 26334526 - 26334376
Alignment:
| Q |
97 |
cttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgacgacgctata |
196 |
Q |
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| T |
26334526 |
cttttcttca--ttatgtgtgtgattgcacccattctaaacacttgtggtagtaggccatatttaatcaatatgaccttttctccaatgaagacgctata |
26334429 |
T |
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| Q |
197 |
aattggatcaagaagagggtgatggggccttactatttcctttttgcagcaac |
249 |
Q |
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| T |
26334428 |
aattggatcaagaatagggtgatgggccctcactctttcctttttgcagcaac |
26334376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 47731491 - 47731537
Alignment:
| Q |
251 |
attcaaggtatgattgataccctcaaagcttcttatcctttcatctc |
297 |
Q |
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| T |
47731491 |
attcaaggtatggttgataccctcaaagcttcttatcctttcatctc |
47731537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 253
Target Start/End: Original strand, 24873567 - 24873730
Alignment:
| Q |
88 |
atgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgac |
187 |
Q |
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| T |
24873567 |
atgatgagacttttcttcatt--gcgtgcgtgatagcacccattctaaacatttgcggcaacatgtcgaatttaatcaagctgattttt-ctccaattaa |
24873663 |
T |
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| Q |
188 |
gacgctataaattggatcaagaa-gagggtgatggggccttactatttcctttttgcagcaacaatt |
253 |
Q |
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| T |
24873664 |
gatgctataaattggaccaaggatgggggtgatgggcccttactctttcctttttgcagcaacaatt |
24873730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 43709297 - 43709260
Alignment:
| Q |
216 |
tgatggggccttactatttcctttttgcagcaacaatt |
253 |
Q |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
43709297 |
tgatgggcccttactatttcctttttgcagcaacaatt |
43709260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 43709184 - 43709139
Alignment:
| Q |
251 |
attcaaggtatgattgataccctcaaagcttcttatcctttcatct |
296 |
Q |
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| T |
43709184 |
attcaaggtatggttgataccctctaagcttgttatccttccatct |
43709139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 27154928 - 27154968
Alignment:
| Q |
251 |
attcaaggtatgattgataccctcaaagcttcttatccttt |
291 |
Q |
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| T |
27154928 |
attcaaggtatggttgacaccctcaaagcttcttatccttt |
27154968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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