View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4648_low_17 (Length: 237)
Name: NF4648_low_17
Description: NF4648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4648_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 10398892 - 10399108
Alignment:
| Q |
1 |
agtccatcaactttagacccgatctatgagaaaattagacagaaaatatttagtttttgagaaaaataaaatcaacttttagtccatgactaaagcaaaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |
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| T |
10398892 |
agtccatcaactttagacccgatcggtgagaaaattagaaagaaaatatttagtttttga-aaaaataaaatcaactttcagtccatgagtaaagcaaaa |
10398990 |
T |
|
| Q |
101 |
caacttttagtctatgagtaaaatnnnnnnncttttagtccttaattacattttgtatagttgataaaagagagatagaggaaataaaggagagtggaat |
200 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10398991 |
caacttttagtccatgagtaaaataaaacaacttttagtccttaattacattttgtaaagttgataaaagagagatagaggaaataaaggagagtggaat |
10399090 |
T |
|
| Q |
201 |
gaaaagattataaagtag |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
10399091 |
gaaaagattataaagtag |
10399108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10397829 - 10398051
Alignment:
| Q |
1 |
agtccatcaactttagacccgatctatgagaaaattagacagaaaatatttagtttttgagaa-aaataaaatcaacttttagtccatgactaaagcaaa |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||| |
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| T |
10397829 |
agtccatcaactttagacccgatctatgagaaaattagaaagaaaatatttagtttttgagaagaaataaaatcaactttcagtccatgagtaaaataaa |
10397928 |
T |
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| Q |
100 |
acaacttttagtctatgagtaaaatnnnnnnncttttagtccttaattacattttgtatagttgataaaagagagatagaggaaataaaggagagtggaa |
199 |
Q |
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| T |
10397929 |
acaacttttagtccatgagtaaaataaaatagcttttagtccttatttacattttgtatagttgataaaagagagatagatgaaataaaggagagtgtaa |
10398028 |
T |
|
| Q |
200 |
tgaaaagattataaagtagttta |
222 |
Q |
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|| | |||||||||||||||||| |
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| T |
10398029 |
tgtagagattataaagtagttta |
10398051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 10408043 - 10408247
Alignment:
| Q |
1 |
agtccatcaactttagacccgatctatgagaaaattagacagaaaatatttagtttttgagaaaaa-taaaatcaacttttagtccatgactaaagcaaa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||||||| ||||||||| |||| || |
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| T |
10408043 |
agtccatcaactttagacccgatctatgagaaaattagaaagaaaatatgtagcttttgagaaaaaataaaatcaactttcagtccatgagtaaaattaa |
10408142 |
T |
|
| Q |
100 |
acaactttt-agtctatgagtaaaatnnnnnnncttttagtccttaattacattttgtatagttgataaaagagagatagaggaaataaaggagagtgga |
198 |
Q |
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||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
10408143 |
acaactttttagtccatgagtaaaataaaataacttttagtccttatttacattttgtatagttgataaaagagagatagagaatataaaggagagtggg |
10408242 |
T |
|
| Q |
199 |
atgaa |
203 |
Q |
| |
|
||||| |
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|
| T |
10408243 |
atgaa |
10408247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 222
Target Start/End: Original strand, 10402626 - 10402795
Alignment:
| Q |
48 |
atttagtttttgagaaaaa-taaaatcaactttt-agtccatgactaaagcaaaacaacttttagtctatgagtaaaatnnnnnnncttttagtccttaa |
145 |
Q |
| |
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||||||||||||||||||| |||||||| | ||| |||| |||| |||| ||||||||||||||| ||||||||||| || ||||| | |
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| T |
10402626 |
atttagtttttgagaaaaaataaaatcagcctttcagtcgatgagtaaa---aaacaacttttagtccatgagtaaaataaaacaactcttagt----at |
10402718 |
T |
|
| Q |
146 |
ttacattttgtatagttgataaaagagagatagaggaaataaaggagagtggaatgaaaagattataaagtagttta |
222 |
Q |
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| |||||||||||||||||||| ||||||| || ||||||||||||||||| |||||| ||||||| ||||| |||| |
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| T |
10402719 |
tcacattttgtatagttgataagagagagagagtggaaataaaggagagtgaaatgaagagattattaagtacttta |
10402795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 10402595 - 10402626
Alignment:
| Q |
1 |
agtccatcaactttagacccgatctatgagaa |
32 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
10402595 |
agtccatcaactttagacccgatctatgagaa |
10402626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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