View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4648_low_2 (Length: 559)

Name: NF4648_low_2
Description: NF4648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4648_low_2
NF4648_low_2
[»] chr7 (7 HSPs)
chr7 (18-361)||(979302-979644)
chr7 (430-548)||(979114-979233)
chr7 (137-201)||(6454906-6454970)
chr7 (137-216)||(20920621-20920701)
chr7 (137-201)||(1454551-1454615)
chr7 (137-173)||(41572959-41572995)
chr7 (138-176)||(2934420-2934458)
[»] chr3 (1 HSPs)
chr3 (127-201)||(8677869-8677943)
[»] chr8 (2 HSPs)
chr8 (141-198)||(9984771-9984828)
chr8 (141-169)||(18005868-18005896)
[»] chr6 (4 HSPs)
chr6 (137-201)||(31130949-31131013)
chr6 (101-184)||(6405919-6406002)
chr6 (92-201)||(32338620-32338729)
chr6 (139-217)||(14679276-14679354)
[»] chr5 (10 HSPs)
chr5 (137-201)||(19078983-19079046)
chr5 (137-201)||(19079227-19079290)
chr5 (137-201)||(22301682-22301745)
chr5 (137-206)||(28739294-28739361)
chr5 (141-201)||(26075901-26075961)
chr5 (137-195)||(17304480-17304537)
chr5 (144-201)||(23213364-23213420)
chr5 (137-201)||(19209633-19209697)
chr5 (137-216)||(21098675-21098753)
chr5 (137-185)||(21493033-21493080)
[»] chr4 (3 HSPs)
chr4 (143-201)||(24627113-24627171)
chr4 (137-201)||(14803718-14803780)
chr4 (139-201)||(3329751-3329813)
[»] chr2 (2 HSPs)
chr2 (139-216)||(17862954-17863031)
chr2 (137-216)||(29746881-29746962)
[»] scaffold0005 (1 HSPs)
scaffold0005 (137-201)||(35947-36009)
[»] scaffold0046 (1 HSPs)
scaffold0046 (141-184)||(89645-89688)
[»] chr1 (3 HSPs)
chr1 (89-126)||(17914027-17914064)
chr1 (137-175)||(1991904-1991942)
chr1 (137-173)||(13270883-13270919)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 979644 - 979302
Alignment:
Q  18 aaatttttctccccttctctctactaccagccaccctcactcattcctccattcttcattcaaatccttaccatatgtataagacgagtaatcctatatt 117  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  979644 aaatttttctccccttctctctactaccaaccaccctcacccgttcctccattcttcattcaaatccttaccatatgtataagacgagtaatcctatatt 979545  T
Q  118 ttgttcagagaaatttatctatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaa-ttagtatagatgttaca 216  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||  || |||||||| ||||||||||||| |||||||||||||||||    
T  979544 ttgttcagagaattttatctatgttgtaattttaatgtatcaaatactaagtttattgcgcatgctaaatattctagataaatttagtatagatgttaca 979445  T
Q  217 cttaatttaagaaaaaagtacggtttcaaatttagttgacagaattgatgcctccttgaactctctccacacctctctttcctcttatcttactttgtta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  979444 cttaatttaagaaaaaagtacggtttcaaatttagttgacagaattgatgcctccttgaactctctccacac--ctctttcctcttctcttactttgtta 979347  T
Q  317 tccttccttaatctagttgaaagaaagattctggatagttggtac 361  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  979346 tccttccttaatctagttgaaagacagattctggatagttggtac 979302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 430 - 548
Target Start/End: Complemental strand, 979233 - 979114
Alignment:
Q  430 caatcactttatattaatacttgggttctaatactcagagtttt-tcccctgtttacatctcaatttccaaccgaattatgttcctttgagtttattctt 528  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||    
T  979233 caatcactttatattaatacctgggttctaatactcagagttttatcccctgtttacatctcaatttccaatcgaatcaggttcctttgagtttattctt 979134  T
Q  529 tggctttcctttttgccttt 548  Q
    ||||||||||||||||||||    
T  979133 tggctttcctttttgccttt 979114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 6454906 - 6454970
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaatt 201  Q
    ||||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||||||||    
T  6454906 tatgttgtaattttattgtatcaagtactaagtttaacgcgtatgctaaatattctagataaatt 6454970  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 20920621 - 20920701
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaa-ttagtatagatgttaca 216  Q
    |||| ||||||||||||||||| |||| |||||||||| |||||||||| |||| |||||||| ||||||| |||||||||    
T  20920621 tatgctgtaattttaatgtatccagtattaagtttaacacacatgctaaatattttagataaatttagtatggatgttaca 20920701  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 1454615 - 1454551
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaacgcacatgcta-agtattctagataaatt 201  Q
    |||||||||||||||||||||| |||| |||| ||||||||||||||| | |||||||||||||||    
T  1454615 tatgttgtaattttaatgtatctagtaataag-ttaacgcacatgctataatattctagataaatt 1454551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 41572959 - 41572995
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaa 173  Q
    |||||||||||||||||||||| ||||||||||||||    
T  41572959 tatgttgtaattttaatgtatctagtactaagtttaa 41572995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 2934458 - 2934420
Alignment:
Q  138 atgttgtaattttaatgtatcaagtactaagtttaacgc 176  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  2934458 atgttgtaattttaatttatccagtactaagtttaacgc 2934420  T

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Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 8677943 - 8677869
Alignment:
Q  127 gaaatttatctatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaatt 201  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8677943 gaaatttgtttatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaaatattctagataaatt 8677869  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 9984771 - 9984828
Alignment:
Q  141 ttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  9984771 ttgtaattttaatgtatcaagtactaagtttaacgcacatgctaactattatagataa 9984828  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 169
Target Start/End: Original strand, 18005868 - 18005896
Alignment:
Q  141 ttgtaattttaatgtatcaagtactaagt 169  Q
    |||||||||||||||||||||||||||||    
T  18005868 ttgtaattttaatgtatcaagtactaagt 18005896  T

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Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 31130949 - 31131013
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaatt 201  Q
    |||||||||||||||||||||| | ||||| |||||||||||||||||| |||||||||||||||    
T  31130949 tatgttgtaattttaatgtatctaatactaggtttaacgcacatgctaaatattctagataaatt 31131013  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 6406002 - 6405919
Alignment:
Q  101 acgagtaatcctatattttgttcagagaaatttatctatgttgtaattttaatgtatcaagtactaagtttaacgcacatgcta 184  Q
    ||||||||| ||||| ||||||||||||||||| |   | |||||||||||||||||||||| | |||||||||||||||||||    
T  6406002 acgagtaattctataatttgttcagagaaatttttaattattgtaattttaatgtatcaagtgccaagtttaacgcacatgcta 6405919  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 32338729 - 32338620
Alignment:
Q  92 atgtataagacgagtaatcctatattttgttcagagaaatttatctatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattc 191  Q
    ||||||||||| | |||| ||||| |||||||  |||||||| | | | |||||||||||||||||| | || ||| ||||||||||||| ||| |||||    
T  32338729 atgtataagacaaataattctatagtttgttcgtagaaatttttatttattgtaattttaatgtatctaatattaaatttaacgcacatgttaattattc 32338630  T
Q  192 tagataaatt 201  Q
    ||||||||||    
T  32338629 tagataaatt 32338620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 14679354 - 14679276
Alignment:
Q  139 tgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaa-ttagtatagatgttacac 217  Q
    |||| ||||||||||||||| | ||||||||| ||| |||||||||| ||||||||||||| ||||||| | ||||||||    
T  14679354 tgttctaattttaatgtatccaatactaagtt-aacacacatgctaaatattctagataaatttagtatgggtgttacac 14679276  T

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Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 19078983 - 19079046
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaatt 201  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||    
T  19078983 tatgttgtaattttaatgtatccagtactaag-ttaacgcacatgctaaatattctagataaatt 19079046  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 19079227 - 19079290
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaatt 201  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||    
T  19079227 tatgttgtaattttaatgtatccagtactaag-ttaacgcacatgctaaatattctagataaatt 19079290  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 22301745 - 22301682
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaatt 201  Q
    |||||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||||||||||    
T  22301745 tatgttgtaattttaatgtatccagtactaag-ttaacgcacacgctaaatattctagataaatt 22301682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 28739361 - 28739294
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaattagtat 206  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||  |||||||| || |||||||    
T  28739361 tatgttgtaattttaatgtatccagtactaag-ttaacgcacatgctaa-aattctagacaatttagtat 28739294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 26075901 - 26075961
Alignment:
Q  141 ttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaatt 201  Q
    ||||||||| |||| ||| | |||||||||||||||||||| ||| |||||||||||||||    
T  26075901 ttgtaatttcaatgcatccaatactaagtttaacgcacatgataaatattctagataaatt 26075961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 17304480 - 17304537
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctaga 195  Q
    ||||||||||||||||||||||  |||||||| ||||||||||| |||| |||||||||    
T  17304480 tatgttgtaattttaatgtatccggtactaag-ttaacgcacattctaaatattctaga 17304537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 23213420 - 23213364
Alignment:
Q  144 taattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaatt 201  Q
    ||||||||||||||||| ||||||| |||| | ||||||||| |||||||||||||||    
T  23213420 taattttaatgtatcaaatactaag-ttaatgtacatgctaaatattctagataaatt 23213364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 19209697 - 19209633
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaatt 201  Q
    |||||||||| ||||||||||||| |||||||||||| |   ||| ||| |||||||||||||||    
T  19209697 tatgttgtaactttaatgtatcaaatactaagtttaatgtgtatgttaaatattctagataaatt 19209633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 21098753 - 21098675
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaattagtatagatgttaca 216  Q
    |||||||||||||||||||||  ||||||||| |||||   |||||||| ||||||||| || ||||||| | |||||||    
T  21098753 tatgttgtaattttaatgtattcagtactaag-ttaacatgcatgctaaatattctagacaatttagtatgggtgttaca 21098675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 21493080 - 21493033
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaa 185  Q
    |||||||||| ||||||||||| ||||||||| |||| |||||||||||    
T  21493080 tatgttgtaaatttaatgtatccagtactaag-ttaatgcacatgctaa 21493033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 24627171 - 24627113
Alignment:
Q  143 gtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaatt 201  Q
    |||||||||||||||| | |||||||| ||||||||||||||| |||| ||||||||||    
T  24627171 gtaattttaatgtatccaatactaagtataacgcacatgctaaatattttagataaatt 24627113  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 14803718 - 14803780
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaatt 201  Q
    |||||||||||||||||||||| ||||| ||| ||||| |||||||||| |||||||||||||||    
T  14803718 tatgttgtaattttaatgtatccagtac-aag-ttaacacacatgctaaatattctagataaatt 14803780  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 3329751 - 3329813
Alignment:
Q  139 tgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaatt 201  Q
    |||||||||||||||||||||| |||||| ||||| |   ||| ||| |||||||||||||||    
T  3329751 tgttgtaattttaatgtatcaattactaattttaatgtgtatgataaatattctagataaatt 3329813  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 17863031 - 17862954
Alignment:
Q  139 tgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaattagtatagatgttaca 216  Q
    |||||||||||||||||||| |||| |||||||||  | |||||||| ||||||||| || ||||||| | |||||||    
T  17863031 tgttgtaattttaatgtatccagtagtaagtttaatacgcatgctaaatattctagacaatttagtatgggtgttaca 17862954  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 29746962 - 29746881
Alignment:
Q  137 tatgttgtaa-ttttaatgtatcaagtactaa-gtttaacgcacatgctaagtattctagataaattagtatagatgttaca 216  Q
    |||||||||| |||||||||||| |||||||| ||||||  ||||| |||| ||||||||| || ||||||| | |||||||    
T  29746962 tatgttgtaaattttaatgtatccagtactaatgtttaatacacatactaaatattctagacaatttagtatgggtgttaca 29746881  T

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Target: scaffold0005 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 36009 - 35947
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaagtattctagataaatt 201  Q
    |||||||||||||||||||||| ||||| ||||| ||| |||||||||| |||||||||||||||    
T  36009 tatgttgtaattttaatgtatccagtac-aagtt-aacacacatgctaaatattctagataaatt 35947  T

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Target: scaffold0046 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 89688 - 89645
Alignment:
Q  141 ttgtaattttaatgtatcaagtactaagtttaacgcacatgcta 184  Q
    |||||||||||||||||| ||||| |||||||||||||||||||    
T  89688 ttgtaattttaatgtatccagtaccaagtttaacgcacatgcta 89645  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 17914064 - 17914027
Alignment:
Q  89 catatgtataagacgagtaatcctatattttgttcaga 126  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  17914064 catatgtataagacgagtaatcctatattttattcaga 17914027  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 1991904 - 1991942
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaacg 175  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  1991904 tatgttgtaattttaatgtatctagtactaactttaacg 1991942  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 13270883 - 13270919
Alignment:
Q  137 tatgttgtaattttaatgtatcaagtactaagtttaa 173  Q
    |||||||||||||||||||||| |||||||| |||||    
T  13270883 tatgttgtaattttaatgtatctagtactaattttaa 13270919  T

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