View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4648_low_5 (Length: 462)
Name: NF4648_low_5
Description: NF4648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4648_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 8e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 254 - 443
Target Start/End: Original strand, 29991427 - 29991616
Alignment:
| Q |
254 |
gtttgccagccagccatcctgataggcaggaaatcaaattcgtagatataagtttaaaaatatatatcatggataagtaagtatataacaaatatctgta |
353 |
Q |
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| T |
29991427 |
gtttgccagccagccatcctgataggcaggaaatcaaattcgtagatataaggttaaaaatatatatcatagataagtaagtatataacaaatatctgta |
29991526 |
T |
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| Q |
354 |
ttcatcatttccatgttgtcccttatatatggttcatatacatgaccatgtgaggttgactatttatcatcatctcctcaaattttctgt |
443 |
Q |
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| T |
29991527 |
ttcatcatttccatgttgtcccttatatatggttcatatacatgaccatgtggggttgactatttatcatcatctcctcaaattttctgt |
29991616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 255
Target Start/End: Original strand, 29990514 - 29990653
Alignment:
| Q |
117 |
ccggtgtgctatagtgtgacactttcctttccactatcaaattcttcccactctttccttca--acaaa---cttagtggtcttcttacccttacaatat |
211 |
Q |
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| T |
29990514 |
ccggtgtgctatagtgtgacactttcctttccactatcaaattcttcccactcttttctacagcaccaaatccaaaaccgtcttcttacccttaccatat |
29990613 |
T |
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| Q |
212 |
ttcttacccatagggtatatatgtatctttatttcatgcatggt |
255 |
Q |
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| T |
29990614 |
ttcttatccataggg----tatgtatctttatttcatgcatggt |
29990653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 29990460 - 29990515
Alignment:
| Q |
6 |
aggtatcaagcaagggaataaacacatcaagacacacacacgtgacataccatacc |
61 |
Q |
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| T |
29990460 |
aggtaccaagcaagggaataaacacatcaagacacacacacgtgacataccatacc |
29990515 |
T |
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