View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4648_low_6 (Length: 445)

Name: NF4648_low_6
Description: NF4648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4648_low_6
NF4648_low_6
[»] chr8 (7 HSPs)
chr8 (3-97)||(34726356-34726450)
chr8 (257-312)||(34725411-34725466)
chr8 (189-242)||(38610280-38610333)
chr8 (189-242)||(38795065-38795118)
chr8 (116-175)||(34726241-34726295)
chr8 (3-89)||(34730581-34730667)
chr8 (397-431)||(39220096-39220130)
[»] chr2 (1 HSPs)
chr2 (357-431)||(17768429-17768504)
[»] chr1 (2 HSPs)
chr1 (360-426)||(51488804-51488871)
chr1 (361-426)||(51489103-51489169)
[»] chr5 (2 HSPs)
chr5 (357-426)||(40600751-40600821)
chr5 (352-426)||(41696093-41696168)
[»] chr3 (3 HSPs)
chr3 (356-426)||(49283632-49283703)
chr3 (397-426)||(37089324-37089353)
chr3 (361-423)||(52960175-52960238)
[»] scaffold0187 (4 HSPs)
scaffold0187 (392-426)||(10994-11028)
scaffold0187 (392-426)||(21322-21356)
scaffold0187 (357-426)||(10563-10633)
scaffold0187 (357-426)||(20891-20961)


Alignment Details
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 34726450 - 34726356
Alignment:
Q  3 gaaaactgtttataaaattgaaatgcttaacaccactcttctttgttgtctttcttatttacttaagagtttaccttgcaagttacatgagacat 97  Q
    |||||||||||  |||||||||||||||||||||||||||||||| | || | |||||||||| |||||||| ||||||||||||||||||||||    
T  34726450 gaaaactgtttgaaaaattgaaatgcttaacaccactcttctttgctctcctgcttatttactcaagagtttgccttgcaagttacatgagacat 34726356  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 34725466 - 34725411
Alignment:
Q  257 caagccataactcatgcagtgagtcagcgcattcctcttgcttcatcagaaccgtg 312  Q
    ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||    
T  34725466 caagccacaactcatgcaatgagtcagtgcattcctcttgcttcatcagaaccgtg 34725411  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 38610333 - 38610280
Alignment:
Q  189 ccttgcaacaaagagtatcaatccatgttatttcacgtttattgccatattttt 242  Q
    ||||||||| ||||||||||||||| |||||||||| | |||||||| ||||||    
T  38610333 ccttgcaaccaagagtatcaatccaggttatttcacatctattgccacattttt 38610280  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 38795118 - 38795065
Alignment:
Q  189 ccttgcaacaaagagtatcaatccatgttatttcacgtttattgccatattttt 242  Q
    ||||||||| ||||||||||||||| |||||||||| | |||||||| ||||||    
T  38795118 ccttgcaaccaagagtatcaatccaggttatttcacatctattgccacattttt 38795065  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 34726295 - 34726241
Alignment:
Q  116 taagttccgttcatttttcatttatttcatttcatggatcttattggattttcaattgtc 175  Q
    ||||||| ||||||||||||||||||||||     |||||| ||||||||||||||||||    
T  34726295 taagttctgttcatttttcatttatttcat-----ggatctgattggattttcaattgtc 34726241  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 34730667 - 34730581
Alignment:
Q  3 gaaaactgtttataaaattgaaatgcttaacaccactcttctttgttgtctttcttatttacttaagagtttaccttgcaagttaca 89  Q
    ||||| |||||  ||| |||| |||||||||  |||  ||||||| |||| | |||||||||  |||||||||||||||||||||||    
T  34730667 gaaaaatgttttaaaacttgacatgcttaacgtcacatttctttgctgtcctgcttatttacgcaagagtttaccttgcaagttaca 34730581  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 39220096 - 39220130
Alignment:
Q  397 ttattggatgtgttaaaagagagtgttagttgatg 431  Q
    ||||||||||||||||||||| |||||||||||||    
T  39220096 ttattggatgtgttaaaagagtgtgttagttgatg 39220130  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 17768504 - 17768429
Alignment:
Q  357 caagttaattgaaataaaaaagtgggacatgag-ccaattcttattggatgtgttaaaagagagtgttagttgatg 431  Q
    ||||||||||||||||||||||||  ||||  | |||| ||||||| | |||||||||||||||||||||| ||||    
T  17768504 caagttaattgaaataaaaaagtgtcacatatgtccaactcttatttggtgtgttaaaagagagtgttagtggatg 17768429  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 426
Target Start/End: Complemental strand, 51488871 - 51488804
Alignment:
Q  360 gttaattgaaataaaaaagtgggaca--tgagccaattcttattggatgtgttaaaagagagtgttagt 426  Q
    |||||||||||| ||||||||| |||  || | ||||| ||||||||||||||||||||||||||||||    
T  51488871 gttaattgaaattaaaaagtggaacacatg-gtcaatttttattggatgtgttaaaagagagtgttagt 51488804  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 426
Target Start/End: Original strand, 51489103 - 51489169
Alignment:
Q  361 ttaattgaaataaaaaagtgggaca--tgagccaattcttattggatgtgttaaaagagagtgttagt 426  Q
    ||||||||||||||||| |||||||  ||| | |||| ||||| ||||||||||||||||| ||||||    
T  51489103 ttaattgaaataaaaaaatgggacacatgatc-aatttttatttgatgtgttaaaagagagggttagt 51489169  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 426
Target Start/End: Complemental strand, 40600821 - 40600751
Alignment:
Q  357 caagttaattgaaataaaaaagtggga--catgagccaattcttattggatgtgttaaaagagagtgttagt 426  Q
    ||||| ||||||| ||||||| |||||  |||| || |||| ||||||||||||||||||||||||||||||    
T  40600821 caagtaaattgaattaaaaaaatgggatacatg-gctaatttttattggatgtgttaaaagagagtgttagt 40600751  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 426
Target Start/End: Complemental strand, 41696168 - 41696093
Alignment:
Q  352 gttttcaagttaattgaaataaaaaagtgggacatgag-ccaattcttattggatgtgttaaaagagagtgttagt 426  Q
    |||| |||| |||||||||||||||| |||||||   | |||||||| ||| | ||||||||||||||||||||||    
T  41696168 gtttacaagataattgaaataaaaaaatgggacacatgtccaattctgatttggtgtgttaaaagagagtgttagt 41696093  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 49283703 - 49283632
Alignment:
Q  356 tcaagttaattgaaataaaaaagtgggacatgagcc-aattcttattggatgtgttaaaagagagtgttagt 426  Q
    |||||||||||||| ||||||||| | ||||  | | |||| ||||||| ||||||||||||||||||||||    
T  49283703 tcaagttaattgaattaaaaaagtagaacatatgactaatttttattgggtgtgttaaaagagagtgttagt 49283632  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 426
Target Start/End: Original strand, 37089324 - 37089353
Alignment:
Q  397 ttattggatgtgttaaaagagagtgttagt 426  Q
    ||||||||||||||||||||||||||||||    
T  37089324 ttattggatgtgttaaaagagagtgttagt 37089353  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 423
Target Start/End: Complemental strand, 52960238 - 52960175
Alignment:
Q  361 ttaattgaaataaaaaagtgggaca--tgagccaattcttattggatgtgttaaaagagagtgtt 423  Q
    |||||| ||||||||||||||||||  || ||||||| ||||||| ||| |||||||||||||||    
T  52960238 ttaattaaaataaaaaagtgggacacatg-gccaattattattgggtgttttaaaagagagtgtt 52960175  T

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Target: scaffold0187 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 426
Target Start/End: Original strand, 10994 - 11028
Alignment:
Q  392 aattcttattggatgtgttaaaagagagtgttagt 426  Q
    |||| ||||||||||||||||||||||||||||||    
T  10994 aatttttattggatgtgttaaaagagagtgttagt 11028  T

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Target: scaffold0187; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 426
Target Start/End: Original strand, 21322 - 21356
Alignment:
Q  392 aattcttattggatgtgttaaaagagagtgttagt 426  Q
    |||| ||||||||||||||||||||||||||||||    
T  21322 aatttttattggatgtgttaaaagagagtgttagt 21356  T

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Target: scaffold0187; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 426
Target Start/End: Complemental strand, 10633 - 10563
Alignment:
Q  357 caagttaattgaaataaaaaagtgggaca--tgagccaattcttattggatgtgttaaaagagagtgttagt 426  Q
    ||||| ||||||| ||||||| |||||||  || || |||| ||||||| ||||||||||||||||||||||    
T  10633 caagtaaattgaattaaaaaaatgggacacatg-gctaatttttattgggtgtgttaaaagagagtgttagt 10563  T

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Target: scaffold0187; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 426
Target Start/End: Complemental strand, 20961 - 20891
Alignment:
Q  357 caagttaattgaaataaaaaagtgggaca--tgagccaattcttattggatgtgttaaaagagagtgttagt 426  Q
    ||||| ||||||| ||||||| |||||||  || || |||| ||||||| ||||||||||||||||||||||    
T  20961 caagtaaattgaattaaaaaaatgggacacatg-gctaatttttattgggtgtgttaaaagagagtgttagt 20891  T

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