View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4649-Insertion-1 (Length: 731)
Name: NF4649-Insertion-1
Description: NF4649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4649-Insertion-1 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 708; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 8 - 731
Target Start/End: Original strand, 46683489 - 46684212
Alignment:
| Q |
8 |
gttttaacaattgttgtaacaacaaatcatctcctctttctgctgcaaagcatagacttactggtaagtccatcctaccgcgagctaacatgttctccgt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46683489 |
gttttaacaattgttgtaacaacaaatcatctcctctttctgctgcaaagcatagacttactggtaagtccatcctaccgcgagctaacatgttctccgt |
46683588 |
T |
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| Q |
108 |
ctctaccaaaactccctccataattggatcgttcagctctttcaaatgctgctcacaataataagtcatgatccaaagacagaaatatgacaacatgtaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46683589 |
ctctaccaaaactccctccataattggatcgttcagctctttcaaatgctgctcacaataataagtcatgatccaaagacagaaatatgacaacatgtaa |
46683688 |
T |
|
| Q |
208 |
taaatcattataatattatacaaacctgaagaagattattcatgattatggttccgtcgccaacattagcttgaacaatattcaagaaggtggtacggtt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46683689 |
taaatcattataatattatacaaacctgaagaagattattcatgattatggttccgtcgccaacattagcttgaacaatattcaagaaggtggtacggtt |
46683788 |
T |
|
| Q |
308 |
cagcctcaacagttgacttaatcgtttggttctaactgtaaaatgttgcggcttatagcaaagtacaccaatctcgccacaaagttctcctgttttcgcc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46683789 |
cagcctcaacagttgacttaatcgtttggttctaactgtaaaatgttgcggcttatagcaaagtacaccaatctcgccacaaagttctcctgttttcgcc |
46683888 |
T |
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| Q |
408 |
tcaccaacaatctgaaatcaattagcaatgtttagatttagtttatatcatatatttcaacacattttcctatcatgcattaagttataaataaaattac |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
46683889 |
tcaccaacaatctgaaatcaattagcaatgtttagatttagtttatatcatatatttcaacacattttcctatcatgcattaagctgtaaataaaattac |
46683988 |
T |
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| Q |
508 |
ctgttcaaccccgcctttgagaactaccaagtcctattaaatagatttattataaaccacaaaaaacttcagtctatattataatccacagttttgaaaa |
607 |
Q |
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| T |
46683989 |
ctgttcaaccccgcctttgagaactaccaagtcctgttaaatagatttattataaaccacaaaaaacttcagtttatattataatccacagttttgaaaa |
46684088 |
T |
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| Q |
608 |
tccccatttagaattcaaattagtaatttggatatttaccacagcaccagtcactagaatgtaaaaatcagttggagcttcattttgtaagataacatct |
707 |
Q |
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| T |
46684089 |
tccccatttagaattcaaattagtaatttggatatttaccacagcaccagtcactagaatgtaaaaatcagttggagcttcattttgtaagataacatct |
46684188 |
T |
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| Q |
708 |
tctttaggtggaaaatactctggc |
731 |
Q |
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|||||||||||||||||||||||| |
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| T |
46684189 |
tctttaggtggaaaatactctggc |
46684212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 233 - 421
Target Start/End: Original strand, 6664899 - 6665084
Alignment:
| Q |
233 |
ctgaagaagattattcatgattatggttccgtcgccaacattagcttgaacaatattcaagaaggtggtacggttcagcctcaacagttgacttaatcgt |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| || |
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| T |
6664899 |
ctgaagaagattattcatgattatggttccgtcgccaacattagcttgaacaatattcaag---gtggtacggttcagcttcagcagttgacttaactgt |
6664995 |
T |
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| Q |
333 |
ttggttctaactgtaaaatgttgcggcttatagcaaagtacaccaatctcgccacaaagttctcctgttttcgcctcaccaacaatctg |
421 |
Q |
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| T |
6664996 |
ttggttctaactgtaaaaggttgcagctcatagcaaagtacaccaatgtcgccacaaagttctcctgttttcgcctcaccgacaatctg |
6665084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 6664778 - 6664901
Alignment:
| Q |
35 |
catctcctctttctgctgcaaagcatagacttactggtaagtccatcctaccgcgagctaacatgttctccgtctctaccaaaactccctccataattgg |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6664778 |
catctcctctttctgctgcaaagcatagacttactggtgaggccatcctaccgcgagctaacatgttctccgtctctaccaaaactccctccataattgg |
6664877 |
T |
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| Q |
135 |
atcgttcagctctttcaaatgctg |
158 |
Q |
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|||||| || |||||||||||||| |
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| T |
6664878 |
atcgttgagttctttcaaatgctg |
6664901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 539
Target Start/End: Original strand, 6665082 - 6665113
Alignment:
| Q |
508 |
ctgttcaaccccgcctttgagaactaccaagt |
539 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
6665082 |
ctgttcaaccccgcctttgagaactaccaagt |
6665113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 1e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 233 - 421
Target Start/End: Original strand, 43305099 - 43305284
Alignment:
| Q |
233 |
ctgaagaagattattcatgattatggttccgtcgccaacattagcttgaacaatattcaagaaggtggtacggttcagcctcaacagttgacttaatcgt |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| || |
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| T |
43305099 |
ctgaagaagattattcatgattatggttccgtcgccaacattagcttgaacaatattcaag---gtggtacggttcagcttcaacagttgacttaactgt |
43305195 |
T |
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| Q |
333 |
ttggttctaactgtaaaatgttgcggcttatagcaaagtacaccaatctcgccacaaagttctcctgttttcgcctcaccaacaatctg |
421 |
Q |
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|||||||||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
43305196 |
ttggttctaactgtaaaaggttgcagctcatagcaaagtacaccaatgtcgccacaaagttctcctgttttcgcctcaccgacaatctg |
43305284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 43304977 - 43305101
Alignment:
| Q |
35 |
catctcctctttctgctgcaaagcatagacttactggtaagtccatcctaccgcgagctaacatgttctccgtctctaccaaaactccctccataattgg |
134 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43304977 |
catctcctctttctgctgcaaagcatagatttactggtaagtccatcctaccgcgagctaacatgttctccgtctctaccaaaactccctccataattgg |
43305076 |
T |
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| Q |
135 |
atcgttcagctc-tttcaaatgctg |
158 |
Q |
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|||||| || || |||||||||||| |
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| T |
43305077 |
atcgttgagttcttttcaaatgctg |
43305101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 539
Target Start/End: Original strand, 43305282 - 43305313
Alignment:
| Q |
508 |
ctgttcaaccccgcctttgagaactaccaagt |
539 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
43305282 |
ctgttcaaccccgcctttgagaactaccaagt |
43305313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 666 - 729
Target Start/End: Original strand, 18167724 - 18167787
Alignment:
| Q |
666 |
atgtaaaaatcagttggagcttcattttgtaagataacatcttctttaggtggaaaatactctg |
729 |
Q |
| |
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||||||| ||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
18167724 |
atgtaaagatctgttggagactcattttgtagcataacatctactttaggtggaaaatactctg |
18167787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 666 - 729
Target Start/End: Original strand, 18631280 - 18631343
Alignment:
| Q |
666 |
atgtaaaaatcagttggagcttcattttgtaagataacatcttctttaggtggaaaatactctg |
729 |
Q |
| |
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||||||| ||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
18631280 |
atgtaaagatctgttggagactcattttgtagcataacatctactttaggtggaaaatactctg |
18631343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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