View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4649-Insertion-2 (Length: 705)
Name: NF4649-Insertion-2
Description: NF4649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4649-Insertion-2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 686; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 8 - 705
Target Start/End: Original strand, 31473145 - 31473842
Alignment:
| Q |
8 |
tgttaatctcctgaggctcctgaactctacgagtcttttccagtaagtcgtgtgctatttctaacttgccacacttttgaaactcatgctcaaatgtgtc |
107 |
Q |
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| T |
31473145 |
tgttaatctcctgaggctcctgaactctacgagtcttttccagtaagtcgtgtgctatttctaacttgccacacttttgaaactcatgctcaaatgtgtc |
31473244 |
T |
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| Q |
108 |
tctagcataggctgataaacgaacacccttttcgagcattgcttttactttctcgtacgcatcacctagttgaccttccttacacaacttcaacaacttc |
207 |
Q |
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| T |
31473245 |
tctagcataagctgataaacgaacacccttttcgagcattgcttttactttctcgtacgcatcacctagttgaccttccttacacaacttcaacaacttc |
31473344 |
T |
|
| Q |
208 |
tgattctccaattttctttccaatttatgacacaaatccaactgatcatgttctctcaaaagactatctaccaaattgtaagtatgaaaatgtggaatcc |
307 |
Q |
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| T |
31473345 |
tgattctccaattttctttccaatttatgacacaaatccaactgatcatgttctctcaaaagactatctaccaaattgtaagtatgaaaatgtggaatcc |
31473444 |
T |
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| Q |
308 |
atcccaagcctaacatttccatcaacaattcataagcgactttccaattcttacacgcacattgagcatggatcagggcaatgtaagttatactatccgg |
407 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31473445 |
atcctaagcctaacatttccatcaacaattcataagcgactttccaattcttacacgcacattgagcatggatcagggcaatgtaagttatactatccgg |
31473544 |
T |
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| Q |
408 |
aaagcatctattcttgttcatgatttcaaacacaccattagcattgtctaaatctcccaatttacacaacatggatataacagaattgtaaacaactaac |
507 |
Q |
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| T |
31473545 |
aaagcatctattcttgttcatgatttcaaacacaccattagcattgtctaaatctcccaatttacacaacatggatataacagaattgtaaacaactaac |
31473644 |
T |
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| Q |
508 |
ttaggctttaagccgatctccaacattctcccaaacaatttaccggcttcctctactctacgatgatcacacaatgccttgatgacaattgagtatccct |
607 |
Q |
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| T |
31473645 |
ttaggctttaagccgatctccaacattctcccaaacaatttaccggcttcctctactctacgatgatcacacaatgccttgatgacaattgagtatccct |
31473744 |
T |
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| Q |
608 |
cttgaacgcaagttagcttcttttcctcaacaatcctcaacactttaacagcttcttcggtattacctaagcgacaaagctctgacataagcctaaac |
705 |
Q |
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| T |
31473745 |
cttgaacgcaagttagtttcttttcctcaacaatcctcaacactttaacagcttcttcggtattacctaagcgacaaagctctgacataagcctaaac |
31473842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 445 - 489
Target Start/End: Complemental strand, 31430823 - 31430779
Alignment:
| Q |
445 |
ttagcattgtctaaatctcccaatttacacaacatggatataaca |
489 |
Q |
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| T |
31430823 |
ttagccttgtccaaatctcccaatttacgcaaaatggatataaca |
31430779 |
T |
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