View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4649-Insertion-3 (Length: 634)
Name: NF4649-Insertion-3
Description: NF4649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4649-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 207 - 634
Target Start/End: Original strand, 45673277 - 45673713
Alignment:
| Q |
207 |
tattagatacccgaaagagaaaacaaagtgaccctttttaacatggtattgttgtgtgaagaaaggtatgtacatgggttttcaataggatgttt----- |
301 |
Q |
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| T |
45673277 |
tattagatacccgaaagagaaaacaaagtgaccctttttaacatggtattgttgtgtgaagaaaggtatgtacatgggttttaaataggatgtttcaaag |
45673376 |
T |
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| Q |
302 |
---caatcaacatacaaagacaaaaagctacagcctattgcacgtgaggtttcatttgtaattgttattgtagaccaattccttgaccatacccaaaggg |
398 |
Q |
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| T |
45673377 |
tttcaatcaacatacaaagacaaaaagctacagcctattgcacgtgaggtttcatttgtaattgttattgtagaccaattccttgaccatacccaaaggg |
45673476 |
T |
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| Q |
399 |
aaaatgaaacatacaccaacgtatagagataactgacagatagattcccttgccactttattcattccttataattcctactaataattaaatcaccttt |
498 |
Q |
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| T |
45673477 |
aaaatgaaacatacaccaacgtatagagataactgacagatagattcccttgccactttattcattccttataattcctactaataattaaatcaccttt |
45673576 |
T |
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| Q |
499 |
cctgcaatccaatccttcttaaactttgatttatgcccaaattaacctttataaaatcatttaggatgaatattgtctcccatttataatt-tttaaatg |
597 |
Q |
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| T |
45673577 |
cctgcaatccaatccttcttaaagtttgatttatgcccaaattaacctttataaaatcatttaggatgaatattgtctcccatttataattataaaaatg |
45673676 |
T |
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| Q |
598 |
tgtttggattggatgtgagattcttaaatattagaca |
634 |
Q |
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| T |
45673677 |
tgtttggattggatgtgagattcttaaatattagaca |
45673713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 45673075 - 45673212
Alignment:
| Q |
8 |
gatcatagtcattattcaaagagttgaagtaattgtctttgtaactatatgtgaatggatcttgttgtgggaaaaccacagtttcaagagcc---attat |
104 |
Q |
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| T |
45673075 |
gatcatagtcattattcaaagagttgaagtaattgtctttgtaactatatgtgaatggatcttgttgtgggaaaaccacagtttcaagagccattattat |
45673174 |
T |
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| Q |
105 |
tattaatttgtgactaatctaaaattattgaagagagg |
142 |
Q |
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| T |
45673175 |
tattaatttgtgactaatctaaaattattgaagagagg |
45673212 |
T |
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