View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4649-Insertion-7 (Length: 151)

Name: NF4649-Insertion-7
Description: NF4649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4649-Insertion-7
NF4649-Insertion-7
[»] chr7 (14 HSPs)
chr7 (14-151)||(22805517-22805654)
chr7 (8-151)||(22815235-22815378)
chr7 (7-151)||(22876124-22876268)
chr7 (8-151)||(22889500-22889643)
chr7 (7-150)||(22809853-22809996)
chr7 (7-145)||(22898477-22898615)
chr7 (7-151)||(22840260-22840404)
chr7 (7-151)||(22894152-22894296)
chr7 (8-99)||(22880824-22880915)
chr7 (13-101)||(22858677-22858765)
chr7 (15-150)||(22885801-22885934)
chr7 (8-101)||(22842422-22842515)
chr7 (15-151)||(22831239-22831375)
chr7 (68-151)||(22913876-22913959)
[»] chr1 (1 HSPs)
chr1 (14-151)||(21150369-21150506)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 3e-65; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 22805654 - 22805517
Alignment:
Q  14 catgctttccatccaaatcctatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataatacctcaatatc 113  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22805654 catgctttctatccaaatccaatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataatacctcaatatc 22805555  T
Q  114 cactttttactggccatggaattgtttttgttctttct 151  Q
    ||| ||||||||||||||||||||||||||||||||||    
T  22805554 caccttttactggccatggaattgtttttgttctttct 22805517  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 22815378 - 22815235
Alignment:
Q  8 aaaggacatgctttccatccaaatcctatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataatacctc 107  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||    
T  22815378 aaaggatatgctttctatccaaatcctatagttttcaaaaacacttccaatgaaagtgtgtcttctttctcaactacttttgtgtttgcaataagacctc 22815279  T
Q  108 aatatccactttttactggccatggaattgtttttgttctttct 151  Q
    ||||||||| ||||| |||||| |||||||||||||||||||||    
T  22815278 aatatccaccttttagtggccaaggaattgtttttgttctttct 22815235  T

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Target: chr7; HSP #3
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 22876268 - 22876124
Alignment:
Q  7 aaaaggacatgctttccatccaaatcctatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataatacct 106  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||    
T  22876268 aaaaggacatggtttctatccaaatcctatagttttcaaaaacacttccaatggaagtgtgtcttctttctcaactacttttgtatttgccataagacct 22876169  T
Q  107 caatatccactttttactggccatggaattgtttttgttctttct 151  Q
    |||||||||  | ||| |||  ||||||||||||||||| |||||    
T  22876168 caatatccaactattagtggtgatggaattgtttttgttgtttct 22876124  T

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Target: chr7; HSP #4
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 22889643 - 22889500
Alignment:
Q  8 aaaggacatgctttccatccaaatcctatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataatacctc 107  Q
    |||||||||| |||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  22889643 aaaggacatggtttctatccaaatccaatagttttcaaaaacacttccagtgaaagcgtgtcttctttctcaactacttttttatttgccataatacctc 22889544  T
Q  108 aatatccactttttactggccatggaattgtttttgttctttct 151  Q
    ||||| ||  | ||  |||||||||||||||||||||| |||||    
T  22889543 aatatgcaaatattggtggccatggaattgtttttgttatttct 22889500  T

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Target: chr7; HSP #5
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 22809996 - 22809853
Alignment:
Q  7 aaaaggacatgctttccatccaaatcctatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataatacct 106  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  22809996 aaaaggacatgctttctatccaaatcctgtagttttcaaaaacactatcagtgaaagtgtatcttctttctcaactacttttgtatttgccataagacct 22809897  T
Q  107 caatatccactttttactggccatggaattgtttttgttctttc 150  Q
    |||||||||  | ||| |  |||||||||||| |||||| ||||    
T  22809896 caatatccaactcttagttcccatggaattgtatttgttgtttc 22809853  T

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Target: chr7; HSP #6
Raw Score: 87; E-Value: 5e-42
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 22898615 - 22898477
Alignment:
Q  7 aaaaggacatgctttccatccaaatcctatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataatacct 106  Q
    ||||| |||||||||| |||||||||||||||||||||| |||||||| | || |||||| ||||||||||||||||||||||| |||||||||| ||||    
T  22898615 aaaagcacatgctttctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacct 22898516  T
Q  107 caatatccactttttactggccatggaattgtttttgtt 145  Q
    |||||||||  | ||| ||||||||||||||||||||||    
T  22898515 caatatccaactcttagtggccatggaattgtttttgtt 22898477  T

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Target: chr7; HSP #7
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 22840404 - 22840260
Alignment:
Q  7 aaaaggacatgctttccatccaaatcctatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataatacct 106  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||| | ||    
T  22840404 aaaaggacaagctttctatccaaatcctatagttttcaaaaacacttccagcggaagtgtttcttctttctcaactacttttgtattttccataaaatct 22840305  T
Q  107 caatatccactttttactggccatggaattgtttttgttctttct 151  Q
      |||||||  | ||| |||||||||||||||||| ||| |||||    
T  22840304 tcatatccaactcttagtggccatggaattgttttcgttatttct 22840260  T

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Target: chr7; HSP #8
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 22894296 - 22894152
Alignment:
Q  7 aaaaggacatgctttccatccaaatcctatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataatacct 106  Q
    ||||| |||||||||| ||||||| ||||||||||| || |||||||||| || |||||| ||||| |||||||||||||||||||||||||||| || |    
T  22894296 aaaagcacatgctttctatccaaaccctatagttttgaagaacacttccaatggaagtgtttcttcattctcaactacttttgtatttgccataagacat 22894197  T
Q  107 caatatccactttttactggccatggaattgtttttgttctttct 151  Q
    |||  ||||  || || ||||||||||||||||||||||||||||    
T  22894196 caaggtccaacttatagtggccatggaattgtttttgttctttct 22894152  T

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Target: chr7; HSP #9
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 22880915 - 22880824
Alignment:
Q  8 aaaggacatgctttccatccaaatcctatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccat 99  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  22880915 aaaggatatgctttctatccaaatcctatagttttcaaaaacacttccaatgaaagtgtgtattctttctcaactacttttgtatttgccat 22880824  T

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Target: chr7; HSP #10
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 22858765 - 22858677
Alignment:
Q  13 acatgctttccatccaaatcctatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataa 101  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  22858765 acatgctttctatccaaatcctatagttttcaaaaacacttctagtgaaactgtgtcttctttctcaactacttttttatttgccataa 22858677  T

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Target: chr7; HSP #11
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 22885934 - 22885801
Alignment:
Q  15 atgctttccatccaaatcctatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataatacctcaatatcc 114  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| || | ||||||| |||| | || |||||||    
T  22885934 atgctttctatccaaatcctatagttttcaaaaacact--cagtgaaagtgtgtcttctttctcaactaattctttatttgctataaaatcttaatatcc 22885837  T
Q  115 actttttactggccatggaattgtttttgttctttc 150  Q
    |  |  || |||||||||||||||||||||| ||||    
T  22885836 aactcatagtggccatggaattgtttttgttatttc 22885801  T

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Target: chr7; HSP #12
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 22842515 - 22842422
Alignment:
Q  8 aaaggacatgctttccatccaaatcctatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataa 101  Q
    ||||| ||||||||  ||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  22842515 aaaggtcatgctttatatccaaaaccaatagttttcaaaaacacttctagtgaaagtgtgtcttctttctcaactacttttttatttgccataa 22842422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 22831375 - 22831239
Alignment:
Q  15 atgctttccatccaaatcctatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataatacctcaatatcc 114  Q
    |||||||| ||||||||| ||||||||| ||||||||||| | || ||||||||| |||||||||||||||||||||||| |||||| | |    |||||    
T  22831375 atgctttctatccaaatcatatagtttttaaaaacacttcgaatgcaagtgtgtcatctttctcaactacttttgtatttaccataaaatccatgtatcc 22831276  T
Q  115 actttttactggccatggaattgtttttgttctttct 151  Q
    |  | ||| ||||||||||||||||||||||||||||    
T  22831275 atctattagtggccatggaattgtttttgttctttct 22831239  T

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Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 22913959 - 22913876
Alignment:
Q  68 tcttctttctcaactacttttgtatttgccataatacctcaatatccactttttactggccatggaattgtttttgttctttct 151  Q
    ||||||||||| ||||||||||| |||||||||| | || | | |||   | ||| ||||||||||||||||||||||||||||    
T  22913959 tcttctttctctactacttttgtttttgccataaaatctgagtttcctaatcttagtggccatggaattgtttttgttctttct 22913876  T

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Target: chr1 (Bit Score: 86; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 21150369 - 21150506
Alignment:
Q  14 catgctttccatccaaatcctatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataatacctcaatatc 113  Q
    ||||||||| |||||||||||||||||||| ||||||||||| | |||||||||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  21150369 catgctttctatccaaatcctatagttttcgaaaacacttccggcgaaagtgtgttttctttttcaactacttttgtatttgccataagacctcaatatc 21150468  T
Q  114 cactttttactggccatggaattgtttttgttctttct 151  Q
    ||  | ||  |||||||||||||||||||||| |||||    
T  21150469 caactcttggtggccatggaattgtttttgttatttct 21150506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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