View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4649_high_5 (Length: 251)
Name: NF4649_high_5
Description: NF4649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4649_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 3604385 - 3604628
Alignment:
| Q |
1 |
agtatgtttattggtattttttgttaatcaatatactaacttactcttagaattaattatggaaaacgatcatttgccatgtcatatatgtcccctaaag |
100 |
Q |
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| T |
3604385 |
agtatgttgattggtattttttgttaatcaatatactaacttactcttagaattaattatggaaaacgatcatttgccatgtcatatatgtcccctaaag |
3604484 |
T |
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| Q |
101 |
aaatcttctctaataaaatcagacaaatcatcccaccaaaaatatgagatgaaagaacttgaagacgcaaagtgaaacaattatgtcatctatttcgcca |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3604485 |
aaatcttccctaataaaatcagacaaatcatcccaccaaaaatatgagatgaaagaacttgaagacccaaagtgaaacaattatgtcatctatttcgcca |
3604584 |
T |
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| Q |
201 |
gatacaagacaccagttcatgtttcttaaacgcaagaataatct |
244 |
Q |
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| T |
3604585 |
gatacaagacaccagttcatgtttcttaaacgcaagaagaatct |
3604628 |
T |
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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 185
Target Start/End: Complemental strand, 27909379 - 27909287
Alignment:
| Q |
93 |
ccctaaagaaatcttctctaataaaatcagacaaatcatcccaccaaaaatatgagatgaaagaacttgaagacgcaaagtgaaacaattatg |
185 |
Q |
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| T |
27909379 |
ccctaaagaaatcttccctaataaaatcaggcaaaacatcccaccaaaaatatgagaagaaagaacttgaagacacaaagtgatacatttatg |
27909287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 55989855 - 55989984
Alignment:
| Q |
55 |
aattatggaaaacgatcatttgccatgtcatatatgtcccctaaagaaatcttctctaataaaatcagacaaatcatcccaccaaaaatatgagatgaaa |
154 |
Q |
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| T |
55989855 |
aattatggaaaacgactatatggcatgccatatctgtccc-taaagcactcttccctgataaaatcaagcaaagcaccccaccaaaaatatgagaagaaa |
55989953 |
T |
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| Q |
155 |
gaacttgaagacgcaaagtgaaacaattatg |
185 |
Q |
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| T |
55989954 |
gaacttgaagacccaaagtgaaacaattatg |
55989984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 208
Target Start/End: Complemental strand, 10876929 - 10876777
Alignment:
| Q |
55 |
aattatggaaaacgatcatttgccatgtcatatatgtcccctaaagaaatcttctctaataaaatcagacaaatcatcccaccaaaaatatgagatgaaa |
154 |
Q |
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| T |
10876929 |
aattaaggaaaatgataatatggcatgccatatttgtccc-taaagatatcttccctagtaaaatcaggcatagcatcccaccaaaaatatgagaagaaa |
10876831 |
T |
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| Q |
155 |
gaacttgaagacgcaaagtgaaacaattatgtcatctatttcgccagatacaag |
208 |
Q |
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| T |
10876830 |
gaacgtgaagatccaaagtgaaataattatgccatctattacgcaaaatacaag |
10876777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 208
Target Start/End: Complemental strand, 10882000 - 10881848
Alignment:
| Q |
55 |
aattatggaaaacgatcatttgccatgtcatatatgtcccctaaagaaatcttctctaataaaatcagacaaatcatcccaccaaaaatatgagatgaaa |
154 |
Q |
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||||| |||||| ||| || || |||| ||||| |||||| |||||| |||||| ||| ||||||||| || | ||||||||||||||||||||| |||| |
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| T |
10882000 |
aattaaggaaaatgataatatggcatgccatatttgtccc-taaagatatcttccctagtaaaatcaggcatagcatcccaccaaaaatatgagaagaaa |
10881902 |
T |
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| Q |
155 |
gaacttgaagacgcaaagtgaaacaattatgtcatctatttcgccagatacaag |
208 |
Q |
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|||| |||||| |||||||||| ||||||| |||||||| ||| | ||||||| |
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| T |
10881901 |
gaacgtgaagatccaaagtgaaataattatgccatctattacgcaaaatacaag |
10881848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 24268991 - 24269114
Alignment:
| Q |
58 |
tatggaaaacgatcatttgccatgtcatatatgtcccctaaagaaatcttctctaataaaatcagacaaatcatcccaccaaaaatatgagatgaaagaa |
157 |
Q |
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|||||||||| || || || |||| ||||| |||||| ||||||||||||| || ||||||||| |||| |||||||||||||||||||| ||||||| |
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| T |
24268991 |
tatggaaaacaataatatggcatgccatatgtgtccc-taaagaaatcttccct--taaaatcaggcaaaa-atcccaccaaaaatatgagaagaaagaa |
24269086 |
T |
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| Q |
158 |
cttgaagacgcaaagtgaaacaattatg |
185 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
24269087 |
cttgaagatccaaagtgaaacaattatg |
24269114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 15561058 - 15561014
Alignment:
| Q |
94 |
cctaaagaaatcttctctaataaaatcagacaaatcatcccacca |
138 |
Q |
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||||||||||||||| ||||||||||||| |||| ||||||||| |
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| T |
15561058 |
cctaaagaaatcttccctaataaaatcaggcaaagtatcccacca |
15561014 |
T |
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