View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4649_high_8 (Length: 230)
Name: NF4649_high_8
Description: NF4649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4649_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 3603670 - 3603741
Alignment:
| Q |
19 |
cattgtcaggtagaatacccctcactttgaatgcatcctttgtcgcaattctattctatcctgcaacacacgccatc |
95 |
Q |
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| T |
3603670 |
cattgtcaggtagaatacccctcactttgaatgcatcctttgtcgca-----attctatcctgcaacacacgccatc |
3603741 |
T |
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Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 3603738 - 3603792
Alignment:
| Q |
123 |
catctctataactgtttaaaagcgataaccatcttagcaaagactgaaacccgta |
177 |
Q |
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| T |
3603738 |
catctctataactgtttaaaagcgataaccatcttagcaaagactgaaacccgta |
3603792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 3604293 - 3604332
Alignment:
| Q |
173 |
ccgtaaaaatgaagtttgaatttggaatagtggttgcttc |
212 |
Q |
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| T |
3604293 |
ccgtaaaaatgaagtttgaatttggaatagtggttgcttc |
3604332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 3601426 - 3601475
Alignment:
| Q |
22 |
tgtcaggtagaatacccctcactttgaatgcatcctttgtcgcaattcta |
71 |
Q |
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| T |
3601426 |
tgtcaggtagaatacccctcactttcaatgcatacttcgtcgtaattcta |
3601475 |
T |
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