View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4649_low_1 (Length: 469)
Name: NF4649_low_1
Description: NF4649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4649_low_1 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 7 - 469
Target Start/End: Complemental strand, 32515558 - 32515096
Alignment:
| Q |
7 |
tcaactatccccacgccttgttctatcaaactacattgaagaacactaccgaagaagtgtacggtgttggaaaatatgaacctgaggttggtgacctcgt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32515558 |
tcaactatccccacgccttgttctatcaaactacattgaagaacactaccgaagaagtgtacggtgtaggaaaatatgaacctgaggttggtgacctcgt |
32515459 |
T |
|
| Q |
107 |
tgcattcacaaatgttcgacctagaagcgtgtctgatttgagcaggatcgaaagatattgtcacataggttatatttgtggatcaaaagatgaacttaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32515458 |
tgcattcacaaatgttcgacctagaagcgtgtctgatttgagcaggatcgaaagatattgtcacataggttatatttgtggatcaaaagatgaacttaat |
32515359 |
T |
|
| Q |
207 |
gatcagattactatgctgttgtccaaggagatgcataacaacattgatttgaggagtaacaaagcccagaaactctacgttgtttatctcattaacatga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32515358 |
gatcagattactatgctgttgtccaaggagatgcataacaacattgatttgaggagtaacaaagcccagaaactctacgttgtttatctcattaacatga |
32515259 |
T |
|
| Q |
307 |
caacaaatattcgtatttggaatgctttgaactcagatatggaagaatccaacatgaatataattaaaaacgtgttgcagccatattcaagggtaagaat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32515258 |
caacaaatattcgtatttggaatgctttgaactcagatatggaagaatccaacatgaatataattaaaaaagtgttgcagccatattcaagggtaagaat |
32515159 |
T |
|
| Q |
407 |
cacaaaattatttattggtttctgttctgcgttatactcatgaaactaatgtttttcaactta |
469 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32515158 |
cacaaaattatttattggtttctattctttgttatactcatgaaactaatgtttttcaactta |
32515096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 23 - 411
Target Start/End: Original strand, 32542213 - 32542589
Alignment:
| Q |
23 |
cttgttctatcaaactacattgaagaacactaccgaagaagtgtacggtgttggaaaatatgaacctgaggttggtgacctcgttgcattcacaaatgtt |
122 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||| || ||||| ||||| || ||||| |||||||||||||||||||| ||| |||||||||||||| || |
|
|
| T |
32542213 |
cttgttctataaaattacattgaagaacattactgatgaagtctacggagtaggaaagtatgaacctgaggttggtgatctcattgcattcacaaatatt |
32542312 |
T |
|
| Q |
123 |
cgacctagaagcgtgtctgatttgagcaggatcgaaagatattgtcacataggttatatttgtggatcaaaagatgaacttaatgatcagattactatgc |
222 |
Q |
| |
|
||||| ||||| ||| ||| ||||| ||||| ||||||| ||||| |||| ||||||| |||||||||||||||| ||| |||| ||||| |||| | |
|
|
| T |
32542313 |
cgaccaagaagtgtggatgacttgagtcggatcaaaagatactgtcatatagcttatattcatggatcaaaagatgaatttactgatgagattcctatac |
32542412 |
T |
|
| Q |
223 |
tgttgtccaaggagatgcataacaacattgatttgaggagtaacaaagcccagaaactctacgttgtttatctcattaacatgacaacaaatattcgtat |
322 |
Q |
| |
|
||||||| | ||| |||| |||| ||| |||||||| ||||||||||| | |||| ||||||||||||||| || ||| ||||||| |
|
|
| T |
32542413 |
tgttgtcatatgag------------tttgacttgaagaggaacaaagcacagaaactctatgcagtttgtctcattaacatgactactaatgttcgtat |
32542500 |
T |
|
| Q |
323 |
ttggaatgctttgaactcagatatggaagaatccaacatgaatataattaaaaacgtgttgcagccatattcaagggtaagaatcacaa |
411 |
Q |
| |
|
|||||| || ||||||||||| ||||| | ||| |||||||||||||| |||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
32542501 |
ttggaaagccttgaactcagagatggagggatcggacatgaatataattcaaaaagtgttgcagccttattcaagggtaagaatcacaa |
32542589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University